KEGG COMPOUND: C00129

COMPOUND: C00129

Entry

C00129 Compound

Name

Isopentenyl diphosphate;
Delta3-Isopentenyl diphosphate;
Delta3-Methyl-3-butenyl diphosphate

Formula

C5H12O7P2

Exact mass

246.0058

Mol weight

246.0921

Structure

Reaction

R01121 R01123 R01658 R01659 R02003 R02061 R03917 R05555
R05556 R05611 R05612 R05613 R05884 R06447 R07267 R07269
R07475 R08400 R08528 R08747 R08748 R08749 R08750 R08751
R08752 R08753 R09244 R09245 R09246 R09247 R09248 R09249
R09250 R09251 R09633 R09730 R09731 R10093

Pathway

map00900	Terpenoid backbone biosynthesis
map01060	Biosynthesis of plant secondary metabolites
map01062	Biosynthesis of terpenoids and steroids
map01070	Biosynthesis of plant hormones
map01100	Metabolic pathways
map01110	Biosynthesis of secondary metabolites
map01130	Biosynthesis of antibiotics
map04216	Ferroptosis

Module

M00095	C5 isoprenoid biosynthesis, mevalonate pathway
M00096	C5 isoprenoid biosynthesis, non-mevalonate pathway
M00364	C10-C20 isoprenoid biosynthesis, bacteria
M00365	C10-C20 isoprenoid biosynthesis, archaea
M00366	C10-C20 isoprenoid biosynthesis, plants
M00367	C10-C20 isoprenoid biosynthesis, non-plant eukaryotes

Enzyme

1.17.7.4        2.5.1.1         2.5.1.10        2.5.1.20
2.5.1.28        2.5.1.29        2.5.1.30        2.5.1.31
2.5.1.68        2.5.1.81        2.5.1.82        2.5.1.83
2.5.1.84        2.5.1.85        2.5.1.86        2.5.1.87
2.5.1.88        2.5.1.89        2.5.1.90        2.5.1.91
2.5.1.92        2.5.1.-         2.7.4.26        4.1.1.33
5.3.3.2

Brite

Lipids [BR:br08002]
PR  Prenol Lipids
  PR01 Isoprenoids
   PR0101 C5 isoprenoids (hemiterpenes)
    C00129  Isopentenyl diphosphate

Other DBs

CAS:

358-71-4

PubChem:

ChEBI:

ChEMBL:

LIPIDMAPS:

LipidBank:

KNApSAcK:

PDB-CCD:

IPE[PDBj]

3DMET:

B00035

NIKKAJI:

J38.556E

LinkDB

KCF data

ATOM        14
            1   P1b P    22.4876  -17.2282
            2   O2c O    23.8598  -17.2220
            3   O2b O    22.4687  -15.7286
            4   O1c O    22.4623  -18.7968
            5   O1c O    21.1091  -17.2282
            6   P1b P    25.2321  -17.2220
            7   C1b C    21.2989  -15.0331
            8   O1c O    25.2257  -15.7097
            9   O1c O    25.2130  -18.8345
            10  O1c O    26.6043  -17.2220
            11  C1b C    20.1100  -15.7224
            12  C2c C    18.9212  -15.0331
            13  C1a C    17.7261  -15.7224
            14  C2a C    18.9212  -13.7308
BOND        13
            1     1   2 1
            2     1   3 1
            3     1   4 1
            4     1   5 2
            5     2   6 1
            6     3   7 1
            7     6   8 1
            8     6   9 1
            9     6  10 2
            10    7  11 1
            11   11  12 1
            12   12  13 1
            13   12  14 2

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