KEGG   ORTHOLOGY: K14579Help
Entry
K14579                      KO                                     

Name
nahAc, ndoB, nbzAc, dntAc
Definition
naphthalene 1,2-dioxygenase subunit alpha [EC:1.14.12.12 1.14.12.23 1.14.12.24]
Pathway
Polycyclic aromatic hydrocarbon degradation
Naphthalene degradation
Aminobenzoate degradation
Nitrotoluene degradation
Ethylbenzene degradation
Degradation of aromatic compounds
Module
M00534  
Naphthalene degradation, naphthalene => salicylate
Brite
KEGG Orthology (KO) [BR:ko00001]
 Metabolism
  Overview
   01220 Degradation of aromatic compounds
    K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
  Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
   00633 Nitrotoluene degradation
    K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
   00642 Ethylbenzene degradation
    K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
   00626 Naphthalene degradation
    K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
   00624 Polycyclic aromatic hydrocarbon degradation
    K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
KEGG modules [BR:ko00002]
 Pathway module
  Secondary metabolism
   Aromatics degradation
    M00534  Naphthalene degradation, naphthalene => salicylate
     K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
Enzymes [BR:ko01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.12  With NADH or NADPH as one donor, and incorporation of two atoms of oxygen into the other donor
    1.14.12.12  naphthalene 1,2-dioxygenase
     K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
    1.14.12.23  nitroarene dioxygenase
     K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
    1.14.12.24  2,4-dinitrotoluene dioxygenase
     K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
BRITE hierarchy
Other DBs
Genes
PSC: 
PSTU: 
PBM: 
ALT: 
BMK: 
DM80_1443(ndoB)
PNA: 
AJS: 
AG: 
AAB09766(dntAc) AAL76202(nbzAc) AAO64274(nahAc) ADQ90222(cnbAc) AGH09226(mntAc)
TaxonomyKoalaUniProt
Reference
PMID:8486285
  Authors
Simon MJ, Osslund TD, Saunders R, Ensley BD, Suggs S, Harcourt A, Suen WC, Cruden DL, Gibson DT, Zylstra GJ
  Title
Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4.
  Journal
Gene 127:31-7 (1993)
DOI:10.1016/0378-1119(93)90613-8
Reference
  Authors
Dennis JJ, Zylstra GJ
  Title
Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene  degradation plasmid from Pseudomonas putida strain NCIB 9816-4.
  Journal
J Mol Biol 341:753-68 (2004)
DOI:10.1016/j.jmb.2004.06.034
  Sequence
Reference
  Authors
Lessner DJ, Johnson GR, Parales RE, Spain JC, Gibson DT
  Title
Molecular characterization and substrate specificity of nitrobenzene dioxygenase  from Comamonas sp. strain JS765.
  Journal
Appl Environ Microbiol 68:634-41 (2002)
DOI:10.1128/AEM.68.2.634-641.2002
  Sequence
Reference
PMID:8759857
  Authors
Suen WC, Haigler BE, Spain JC
  Title
2,4-Dinitrotoluene dioxygenase from Burkholderia sp. strain DNT: similarity to naphthalene dioxygenase.
  Journal
J Bacteriol 178:4926-34 (1996)
DOI:10.1128/JB.178.16.4926-4934.1996
  Sequence
LinkDB All DBs

KEGG   ORTHOLOGY: K14580Help
Entry
K14580                      KO                                     

Name
nahAd, ndoC, nbzAd, dntAd
Definition
naphthalene 1,2-dioxygenase subunit beta [EC:1.14.12.12 1.14.12.23 1.14.12.24]
Pathway
Polycyclic aromatic hydrocarbon degradation
Naphthalene degradation
Aminobenzoate degradation
Nitrotoluene degradation
Ethylbenzene degradation
Degradation of aromatic compounds
Module
M00534  
Naphthalene degradation, naphthalene => salicylate
Brite
KEGG Orthology (KO) [BR:ko00001]
 Metabolism
  Overview
   01220 Degradation of aromatic compounds
    K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
  Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
   00633 Nitrotoluene degradation
    K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
   00642 Ethylbenzene degradation
    K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
   00626 Naphthalene degradation
    K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
   00624 Polycyclic aromatic hydrocarbon degradation
    K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
KEGG modules [BR:ko00002]
 Pathway module
  Secondary metabolism
   Aromatics degradation
    M00534  Naphthalene degradation, naphthalene => salicylate
     K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
Enzymes [BR:ko01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.12  With NADH or NADPH as one donor, and incorporation of two atoms of oxygen into the other donor
    1.14.12.12  naphthalene 1,2-dioxygenase
     K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
    1.14.12.23  nitroarene dioxygenase
     K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
    1.14.12.24  2,4-dinitrotoluene dioxygenase
     K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
BRITE hierarchy
Other DBs
Genes
PSC: 
PSTU: 
PBM: 
ALT: 
RMN: 
BMK: 
DM80_1444(ndoC)
PNA: 
AJS: 
AG: 
AAB09767(dntAd) AAL76203(nbzAd) AAO64275(nahAd) ADQ90223(cnbAd) AGH09227(mntAd)
TaxonomyKoalaUniProt
Reference
PMID:8486285
  Authors
Simon MJ, Osslund TD, Saunders R, Ensley BD, Suggs S, Harcourt A, Suen WC, Cruden DL, Gibson DT, Zylstra GJ
  Title
Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4.
  Journal
Gene 127:31-7 (1993)
DOI:10.1016/0378-1119(93)90613-8
Reference
  Authors
Dennis JJ, Zylstra GJ
  Title
Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene  degradation plasmid from Pseudomonas putida strain NCIB 9816-4.
  Journal
J Mol Biol 341:753-68 (2004)
DOI:10.1016/j.jmb.2004.06.034
  Sequence
Reference
  Authors
Lessner DJ, Johnson GR, Parales RE, Spain JC, Gibson DT
  Title
Molecular characterization and substrate specificity of nitrobenzene dioxygenase  from Comamonas sp. strain JS765.
  Journal
Appl Environ Microbiol 68:634-41 (2002)
DOI:10.1128/AEM.68.2.634-641.2002
  Sequence
Reference
PMID:8759857
  Authors
Suen WC, Haigler BE, Spain JC
  Title
2,4-Dinitrotoluene dioxygenase from Burkholderia sp. strain DNT: similarity to naphthalene dioxygenase.
  Journal
J Bacteriol 178:4926-34 (1996)
DOI:10.1128/JB.178.16.4926-4934.1996
  Sequence
LinkDB All DBs

KEGG   ORTHOLOGY: K14578Help
Entry
K14578                      KO                                     

Name
nahAb, nagAb, ndoA, nbzAb, dntAb
Definition
naphthalene 1,2-dioxygenase ferredoxin component
Pathway
Polycyclic aromatic hydrocarbon degradation
Naphthalene degradation
Aminobenzoate degradation
Nitrotoluene degradation
Ethylbenzene degradation
Degradation of aromatic compounds
Module
M00534  
Naphthalene degradation, naphthalene => salicylate
M00638  
Salicylate degradation, salicylate => gentisate
Brite
KEGG Orthology (KO) [BR:ko00001]
 Metabolism
  Overview
   01220 Degradation of aromatic compounds
    K14578  nahAb, nagAb, ndoA, nbzAb, dntAb; naphthalene 1,2-dioxygenase ferredoxin component
  Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    K14578  nahAb, nagAb, ndoA, nbzAb, dntAb; naphthalene 1,2-dioxygenase ferredoxin component
   00633 Nitrotoluene degradation
    K14578  nahAb, nagAb, ndoA, nbzAb, dntAb; naphthalene 1,2-dioxygenase ferredoxin component
   00642 Ethylbenzene degradation
    K14578  nahAb, nagAb, ndoA, nbzAb, dntAb; naphthalene 1,2-dioxygenase ferredoxin component
   00626 Naphthalene degradation
    K14578  nahAb, nagAb, ndoA, nbzAb, dntAb; naphthalene 1,2-dioxygenase ferredoxin component
   00624 Polycyclic aromatic hydrocarbon degradation
    K14578  nahAb, nagAb, ndoA, nbzAb, dntAb; naphthalene 1,2-dioxygenase ferredoxin component
KEGG modules [BR:ko00002]
 Pathway module
  Secondary metabolism
   Aromatics degradation
    M00534  Naphthalene degradation, naphthalene => salicylate
     K14578  nahAb, nagAb, ndoA, nbzAb, dntAb; naphthalene 1,2-dioxygenase ferredoxin component
    M00638  Salicylate degradation, salicylate => gentisate
     K14578  nahAb, nagAb, ndoA, nbzAb, dntAb; naphthalene 1,2-dioxygenase ferredoxin component
BRITE hierarchy
Other DBs
Genes
EBT: 
PSD: 
PSC: 
PSTU: 
PBM: 
PFK: 
ALT: 
MMW: 
MME: 
MPC: 
RSO: 
RSc1088(nagAb)
RSL: 
RSN: 
RSM: 
RSE: 
RPJ: 
RMN: 
REU: 
REH: 
H16_A1631(nagI)
CNC: 
CBW: 
CCUP: 
BMK: 
DM80_1442(ndoA)
BCEP: 
BPYR: 
BUB: 
BW23_5817(ndoA)
BGL: 
BGU: 
KS03_3915(ndoA)
BUG: 
BUQ: 
BXE: 
BXB: 
BPX: 
BFN: 
OI25_3048(ndoA)
PSPW: 
PPK: 
PPNO: 
PPNM: 
PRB: 
PPUL: 
PSPU: 
PAPI: 
PVE: 
POX: 
PFG: 
PNR: 
BPA: 
BPP2189(ndoA)
BPAR: 
BBR: 
BB1586(ndoA)
BBM: 
BBH: 
BBX: 
BPT: 
AXY: 
AXO: 
AXN: 
AXS: 
AXX: 
ADT: 
AIS: 
POL: 
PNA: 
AAV: 
AJS: 
AAA: 
ACK: 
VAP: 
VPE: 
VPD: 
CTES: 
LIM: 
LIH: 
HYB: 
HYL: 
MASW: 
LCH: 
AZO: 
azo2514(nagAb)
MSL: 
JAN: 
SPAN: 
AZL: 
ALI: 
TMO: 
TMO_a0552(doxA)
NVN: 
TAA: 
NMY3_03310(nagAb_4)
AG: 
AAA25905(nahAb) AAB09765(dntAb) AAL76201(nbzAb) AGH09225(mntAb)
 » show all
TaxonomyKoalaUniProt
Reference
PMID:8486285
  Authors
Simon MJ, Osslund TD, Saunders R, Ensley BD, Suggs S, Harcourt A, Suen WC, Cruden DL, Gibson DT, Zylstra GJ
  Title
Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4.
  Journal
Gene 127:31-7 (1993)
DOI:10.1016/0378-1119(93)90613-8
Reference
  Authors
Dennis JJ, Zylstra GJ
  Title
Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene  degradation plasmid from Pseudomonas putida strain NCIB 9816-4.
  Journal
J Mol Biol 341:753-68 (2004)
DOI:10.1016/j.jmb.2004.06.034
  Sequence
LinkDB All DBs

KEGG   ORTHOLOGY: K14581Help
Entry
K14581                      KO                                     

Name
nahAa, nagAa, ndoR, nbzAa, dntAa
Definition
naphthalene 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.7]
Pathway
Polycyclic aromatic hydrocarbon degradation
Naphthalene degradation
Aminobenzoate degradation
Nitrotoluene degradation
Ethylbenzene degradation
Degradation of aromatic compounds
Module
M00534  
Naphthalene degradation, naphthalene => salicylate
M00638  
Salicylate degradation, salicylate => gentisate
Brite
KEGG Orthology (KO) [BR:ko00001]
 Metabolism
  Overview
   01220 Degradation of aromatic compounds
    K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
  Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
   00633 Nitrotoluene degradation
    K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
   00642 Ethylbenzene degradation
    K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
   00626 Naphthalene degradation
    K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
   00624 Polycyclic aromatic hydrocarbon degradation
    K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
KEGG modules [BR:ko00002]
 Pathway module
  Secondary metabolism
   Aromatics degradation
    M00534  Naphthalene degradation, naphthalene => salicylate
     K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
    M00638  Salicylate degradation, salicylate => gentisate
     K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
Enzymes [BR:ko01000]
 1. Oxidoreductases
  1.18  Acting on iron-sulfur proteins as donors
   1.18.1  With NAD+ or NADP+ as acceptor
    1.18.1.7  ferredoxin---NAD(P)+ reductase (naphthalene dioxygenase ferredoxin-specific)
     K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
BRITE hierarchy
Other DBs
Genes
EBT: 
PSC: 
PSTU: 
PBM: 
PFK: 
ALT: 
MMW: 
MME: 
MPC: 
RSO: 
RSc1091(nagAa)
RSL: 
RSN: 
RSM: 
RSE: 
RPJ: 
RMN: 
CBW: 
CCUP: 
BMK: 
DM80_1434(ndoR) DM80_1439(ndoR)
BUG: 
BUQ: 
BPX: 
BFN: 
OI25_3043(ndoR)
PPK: 
PPNO: 
PPNM: 
PRB: 
PPUL: 
PSPU: 
PAPI: 
PVE: 
POX: 
PFG: 
PNR: 
AXY: 
POL: 
PNA: 
AAV: 
AJS: 
AAA: 
ACK: 
VPE: 
LCH: 
THI: 
AZO: 
azo2517(nagAa)
SIX: 
OAH: 
RBM: 
PYE: 
SGI: 
TMO: 
TMO_2240(ndoR)
AG: 
AAA25904(nahAa) AAB09763(dntAa) AAD12606(nagAa) AAL76199(nbzAa) AGH09224(mntAa)
 » show all
TaxonomyKoalaUniProt
Reference
PMID:8486285
  Authors
Simon MJ, Osslund TD, Saunders R, Ensley BD, Suggs S, Harcourt A, Suen WC, Cruden DL, Gibson DT, Zylstra GJ
  Title
Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4.
  Journal
Gene 127:31-7 (1993)
DOI:10.1016/0378-1119(93)90613-8
Reference
  Authors
Dennis JJ, Zylstra GJ
  Title
Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene  degradation plasmid from Pseudomonas putida strain NCIB 9816-4.
  Journal
J Mol Biol 341:753-68 (2004)
DOI:10.1016/j.jmb.2004.06.034
  Sequence
LinkDB All DBs

KEGG   ENZYME: 1.14.12.12Help
Entry
EC 1.14.12.12               Enzyme                                 

Name
naphthalene 1,2-dioxygenase;
naphthalene dioxygenase;
naphthalene oxygenase;
NDO
Class
Oxidoreductases;
Acting on paired donors, with incorporation or reduction of molecular oxygen;
With NADH or NADPH as one donor, and incorporation of two atoms of oxygen into the other donor
BRITE hierarchy
Sysname
naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
Reaction(IUBMB)
naphthalene + NADH + H+ + O2 = (1R,2S)-1,2-dihydronaphthalene-1,2-diol + NAD+ [RN:R02968]
Reaction(KEGG)
Substrate
naphthalene [CPD:C00829];
NADH [CPD:C00004];
H+ [CPD:C00080];
O2 [CPD:C00007]
Product
(1R,2S)-1,2-dihydronaphthalene-1,2-diol [CPD:C04314];
NAD+ [CPD:C00003]
Comment
This enzyme is a member of the ring-hydroxylating dioxygenase (RHD) family of bacterial enzymes that play a critical role in the degradation of aromatic compounds, such as polycyclic aromatic hydrocarbons [5]. This enzyme comprises a multicomponent system, containing a reductase that is an iron-sulfur flavoprotein (FAD; EC 1.18.1.3, ferredoxin---NAD+ reductase), an iron-sulfur oxygenase, and ferredoxin. Requires Fe2+.
History
EC 1.14.12.12 created 1992
Pathway
Polycyclic aromatic hydrocarbon degradation
Naphthalene degradation
Ethylbenzene degradation
Metabolic pathways
Microbial metabolism in diverse environments
Orthology
K14579  
naphthalene 1,2-dioxygenase subunit alpha
K14580  
naphthalene 1,2-dioxygenase subunit beta
Genes
PSC: 
PSTU: 
PBM: 
ALT: 
RMN: 
BMK: 
DM80_1443(ndoB) DM80_1444(ndoC)
PNA: 
AJS: 
Taxonomy
Reference
1  [PMID:6874638]
  Authors
Ensley BD, Gibson DT.
  Title
Naphthalene dioxygenase: purification and properties of a terminal oxygenase component.
  Journal
J. Bacteriol. 155 (1983) 505-11.
Reference
2  [PMID:234247]
  Authors
Jeffrey AM, Yeh HJ, Jerina DM, Patel TR, Davey JF, Gibson DT.
  Title
Initial reactions in the oxidation of naphthalene by Pseudomonas putida.
  Journal
Biochemistry. 14 (1975) 575-84.
Reference
3  [PMID:9634695]
  Authors
Kauppi B, Lee K, Carredano E, Parales RE, Gibson DT, Eklund H, Ramaswamy S
  Title
Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase.
  Journal
Structure. 6 (1998) 571-86.
Reference
4  [PMID:10692370]
  Authors
Parales RE, Lee K, Resnick SM, Jiang H, Lessner DJ, Gibson DT
  Title
Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme.
  Journal
J. Bacteriol. 182 (2000) 1641-9.
Reference
5  [PMID:17014090]
  Authors
Jouanneau Y, Meyer C, Jakoncic J, Stojanoff V, Gaillard J
  Title
Characterization of a naphthalene dioxygenase endowed with an exceptionally broad substrate specificity toward polycyclic aromatic hydrocarbons.
  Journal
Biochemistry. 45 (2006) 12380-91.
Other DBs
ExplorEnz - The Enzyme Database: 
IUBMB Enzyme Nomenclature: 
ExPASy - ENZYME nomenclature database: 
UM-BBD (Biocatalysis/Biodegradation Database): 
BRENDA, the Enzyme Database: 
CAS: 
9074-04-8
LinkDB All DBs

KEGG   REACTION: R05427Help
Entry
R05427                      Reaction                               

Definition
2 Acetophenone + Oxygen <=> 2 2-Hydroxyacetophenone
Equation
2 C07113 + C00007 <=> 2 C07189
Reaction class
C07113_C07189
Enzyme
Pathway
Ethylbenzene degradation
Microbial metabolism in diverse environments
Orthology
K14578  
naphthalene 1,2-dioxygenase ferredoxin component
K14579  
naphthalene 1,2-dioxygenase subunit alpha [EC:1.14.12.12 1.14.12.23 1.14.12.24]
K14580  
naphthalene 1,2-dioxygenase subunit beta [EC:1.14.12.12 1.14.12.23 1.14.12.24]
K14581  
naphthalene 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.7]
LinkDB All DBs

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