Aminobacter aminovorans: AA2016_3858
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Entry
AA2016_3858 CDS
T04343
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aak
Aminobacter aminovorans
Pathway
aak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AA2016_3858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aak03019
]
AA2016_3858
03016 Transfer RNA biogenesis [BR:
aak03016
]
AA2016_3858
Enzymes [BR:
aak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AA2016_3858
Messenger RNA biogenesis [BR:
aak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AA2016_3858
Transfer RNA biogenesis [BR:
aak03016
]
Prokaryotic type
tRNA degradation factors
AA2016_3858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AMS42777
LinkDB
All DBs
Position
3944622..3946937
Genome browser
AA seq
771 aa
AA seq
DB search
MARKISGRNAGTRRAASDEVRGKDVYRPSRDEILRYIAENPDRSGKRDIAKAFALKNDDR
IWLKHLLRELQDEGLLEKSRKRLTRAGALPHVAVLDIFGRDAEGTLLARASEQPDGPIVA
IKLSRTGNGPVPGVGDRVLAKTFPVDDHIDDNEPAYTARVMKMFEKRADTALGIFRILKD
GSFRIEPVERRQPELVIDKDHHNGAKDGDLVEVVPERASRYGLPRAKVVSVLGSLTNEKA
VSMIAIHAHDIPHIFPADVIAEAEAVKPATLDGKREDWRELPLVTIDPADAKDHDDAVYA
VADSDEKNPGGFIVTVAIADVAAYVRPGTALDNEALKRGNSVYFPDRVVPMLPERISNDL
CSLREGVDRPALAVRMTFSAEGRKIRHAFHRIMMRSSARLAYPQAQAAIDGIPDEKTGPI
LETVLKPLWAAYDVLKRGRDSRQPLELDLPERKILLKPDGTVDRVIVPDRLDAHKLIEEF
MIQANVAAAETLENKKQKLVYRIHDGPSLAKQESLREFLQTIGLSLARGAAMRPSQFNGI
LEQVRGGDNEQLVNEVVLRSQSQAEYNPDNIGHFGLNLRRYAHFTSPIRRYADLIVHRAL
IGSLGLGAGGLTPQEEARLEETAGLISQTERRAMAAERETVDRLVAGFLAERVDETFEAR
ISGVVKAGLFVQLPQYGADGFIPVSSLGDDYYHFDEAARALFGERSGKGYQLADRVEVKL
VEIAPLAGAMRFEMLTEPKPLPGSKRSFHKTKGQRTRARASQPRRGPRGRR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgaaagatttccggacgaaatgccggcaccagacgcgccgcaagcgacgaggtc
cgtggcaaggacgtctaccggccgtcgcgggacgagattctgcgctacatcgccgagaat
cctgaccgcagcggcaagcgcgacatcgccaaggcctttgcgctcaagaatgacgaccgc
atctggctgaagcacctgctgcgcgagttgcaggacgaaggtctgctggaaaagagccgc
aagcgcctgacccgcgccggcgcgttgccgcatgtcgccgtgctcgacatttttggccgc
gacgccgaaggcacgcttttggcccgcgcctccgaacagcctgacggcccgatcgtggcc
atcaagctgtcgcgcaccggcaatggacctgtgcccggcgtcggcgaccgcgtgctggcc
aagaccttccccgtcgacgatcatatcgacgacaacgagccggcctacaccgcccgcgtg
atgaagatgttcgagaagcgcgccgacacggcgctcggcattttccgcatcctcaaggac
ggcagcttccgcatcgagccggttgaacgccgccagcccgagctggtgatcgacaaggac
caccacaacggcgccaaggacggcgatctggtcgaagtggtgccggaacgggccagccgt
tacggcctgccgcgcgccaaggtggtatcggtactgggttcgttgaccaatgagaaggcg
gtctcgatgatcgccatccatgcccacgacattccccacatattccccgccgacgtgatc
gccgaagccgaggccgtgaaaccggcgacgctagacggcaagcgcgaggactggcgcgag
ctgccgttggtcaccatcgaccccgccgacgccaaggatcacgacgacgccgtctatgcc
gtcgccgacagcgacgagaagaaccccggcggcttcatcgtcacagtcgctatcgccgac
gtggcagcctatgtccgtccgggcacggcgctcgacaacgaggcactgaagcgcggcaac
tcggtctacttccccgaccgcgtcgtgccgatgctgcccgagcgcatctccaacgatctg
tgctcgctgcgcgaaggtgtcgaccgcccggcgctggccgtgcgcatgacgttttcggcc
gagggccgcaagatcaggcacgccttccaccgcatcatgatgcggtcttcggcccgcctc
gcctatccgcaggcgcaagccgccatcgatggcatcccggatgagaagaccgggccgatc
ctggagaccgtcctcaagccgttatgggccgcctatgacgtgctcaagcgcggccgcgac
agtcgccagccgctcgaactcgacctgcccgaacgcaagatcctgctcaagccggacggc
acggtggaccgcgtcatcgttcccgatcgcctcgacgcccacaagctgatcgaagagttc
atgatccaggcgaacgtcgcggctgccgagacgctggagaacaagaagcagaagctcgtc
taccgcatccatgacggcccttcgctggccaagcaggaatcgctgcgcgaattcctgcag
acgatcggcctgtcgctggcgcgtggggccgcgatgcgtccaagccagttcaacggcatc
ctcgagcaggtgcgcggcggcgacaatgagcagctcgtcaacgaggtggtgctgcgttcg
cagagccaggccgaatacaatcccgacaacatcggtcacttcggcctcaatttgcgccgc
tacgcgcatttcacctcgccgatccgccgttatgccgacctcatcgtgcatcgcgcgctg
attgggtcgctcggcctcggtgccggcggcctgacgccccaggaggaagcgcggctggaa
gagaccgccgggctgatctcgcagacggaacgccgcgccatggcagcagagcgcgagacc
gtcgacaggctggtcgcgggtttcctggccgagcgcgtcgacgagacattcgaggcgcgc
atttccggcgtcgtcaaggcgggactatttgtccaattgccgcaatatggcgcggatggt
ttcatcccggtgtcatcgctaggtgacgactattaccatttcgacgaagcagcccgcgcc
ctgttcggcgaacgctccggcaagggctaccagctcgccgaccgtgtcgaggtcaagctg
gtcgaaatcgcgccgctggcgggtgccatgcgcttcgagatgctgaccgaaccgaagccc
ctgcccggttccaagcggtccttccacaagaccaaggggcaacgaacgcgtgcccgcgcc
tcccagccacggcgaggacctcgcggcaggagatga
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