KEGG   Candidatus Koribacter versatilis: Acid345_0779Help
Entry
Acid345_0779      CDS       T00352                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aba  Candidatus Koribacter versatilis
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aba00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    Acid345_0779
Enzymes [BR:aba01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Acid345_0779
DNA repair and recombination proteins [BR:aba03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Acid345_0779
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
JGI: 
UniProt: 
LinkDB All DBs
Position
complement(961481..963307)
Genome map
AA seq 608 aa AA seqDB search
MALEEYKKKRRFTDTPEPPPSIDKSKGHRFVVQKHHASRLHYDFRLEMDGVLKSWAVPKG
PSLDPADKRLAMAVEDHPVSYLKFEGIIPENNYGAGTVMVWDIGTWEPVGDADAMLAKGD
LKFRLKGKKLNGEFALVHIKSRRSGTKGNEWLLIKHRDDAVVPGYDIDEYDFSALTKRSL
DDIAGDQKSAEWQSNRAGSSNIPQKSAWLADAIKKADKKAAAKKTAVKTKAPAKKSAKTA
AKKAVKTTATKKQKDAHPAFADLKGARHAAMPSQIQPMLATLVDEPFEDSQWLYEIKWDG
YRAVTFLNDGKLRFVSRNGNDLTNAYPELHDIGGSISAQRAILDGEIVALDGEGRSSFSL
MQQRTGIGEGGRRTGKGNANIPVQYYAFDLLYLDGYDLTHVSLEDRKRVLSEIISPSDVL
RVSDSFDEGLPLYEAARARGLEGIIAKRRESCYLTKRSREWLKIKITQRQECVIGGYTEP
KGSRENFGSVVLGLYDDKGRLIPVGQAGSGFTAQSNAALWKKLQKLETKTSPFFGKPDSP
RQVHYVRPELVAEIKFTEWTHQGQSGQVRMRAPVFEGLRTDKSPSECVFDFAKPTKLEVK
KAESGDAA
NT seq 1827 nt NT seq  +upstreamnt  +downstreamnt
atggcactcgaggaatacaaaaagaaacgtcgctttactgacacccccgagcctccaccc
tcgatcgacaaaagcaaaggtcatcgcttcgtggtgcagaagcaccacgcctcacgtctc
cactacgacttccgccttgagatggacggcgtgctgaagtcctgggccgtgcccaaaggc
ccatcgctcgatcccgccgacaagcgcctcgccatggctgtcgaagatcatcccgtctcg
tatctcaaattcgaaggcatcatccccgagaacaactacggcgcaggcaccgtgatggtc
tgggacatcggcacctgggagccggttggcgacgccgacgccatgctcgccaagggcgat
ctcaaattccggttgaagggcaaaaagctcaacggcgaattcgctctggtgcacatcaag
tcgcgccgctccggcaccaagggtaacgagtggctgctgatcaagcaccgcgatgacgcc
gtcgtccctggctacgacatcgacgagtacgacttctccgccctcaccaagcgctcgctc
gacgacatcgccggcgaccagaaatcggccgagtggcaaagcaatcgcgccggatcctcc
aacatcccgcagaaaagcgcgtggctcgcggacgccatcaagaaggccgacaagaaagct
gccgcaaaaaagaccgctgtaaaaacaaaggctccagcaaaaaagtccgccaaaaccgca
gccaagaaagctgtgaagaccaccgcaaccaagaaacagaaagacgcgcacccggcgttc
gccgatctcaaaggcgcgcgtcacgccgcgatgccgtcgcaaatccagcccatgctcgcc
acgctcgtagatgagccctttgaagactcccagtggctctacgagatcaagtgggacggc
tatcgcgccgtcaccttcctcaacgatggcaaacttcgcttcgtctcgcgcaacggcaac
gacctaactaacgcctatcctgaactgcacgacatcggcggaagcatctccgcgcaacgc
gccattctcgacggcgaaatcgtcgccctcgacggcgaaggccgctcctccttcagcctg
atgcaacaacgcactggcatcggcgagggcggacgccgcaccggcaagggcaacgccaac
attcccgtgcagtattacgccttcgacctgctctaccttgacggctacgacctcacgcac
gtctcgctcgaggaccgcaaacgggtgctcagcgaaatcatctcgcccagcgacgtactg
cgtgtctctgactccttcgacgagggcctgcctctctacgaagccgcccgcgcgcgcggg
ctcgaaggcatcatcgccaagcgtcgcgagagttgctatctcaccaagcgcagccgcgag
tggctgaagatcaagatcacgcagcgccaggagtgcgtgattggcggctataccgagccc
aagggcagtcgcgaaaatttcggctccgtcgtcctcggcctctacgacgacaaaggccgc
ctcatccccgttggccaggccggcagcggtttcaccgcccagtcaaacgctgccctgtgg
aagaaactccagaagctcgaaaccaaaacttcaccgttcttcggcaagcccgacagcccg
cgccaggtccactatgtccgccctgaactcgttgccgaaatcaagttcaccgagtggacg
caccaaggccaaagcggccaggtcagaatgcgcgcccctgttttcgaagggctgcgcact
gacaaatcgccgagcgaatgcgtcttcgatttcgcgaagccaacaaaattagaagtgaaa
aaagccgaaagcggcgacgccgcgtag

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