Alcanivorax borkumensis: ABO_1819
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Entry
ABO_1819 CDS
T00380
Symbol
recB
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
abo
Alcanivorax borkumensis
Pathway
abo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
abo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ABO_1819 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abo03400
]
ABO_1819 (recB)
Enzymes [BR:
abo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ABO_1819 (recB)
DNA repair and recombination proteins [BR:
abo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ABO_1819 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
AAA_30
ResIII
GspL_C
Motif
Other DBs
NCBI-ProteinID:
CAL17267
UniProt:
Q0VNI1
LinkDB
All DBs
Position
2074761..2078381
Genome browser
AA seq
1206 aa
AA seq
DB search
MNIERPLPITFPLHGTRLIEASAGTGKTFTLAALYLRLVLGHGGENGFSRPLLPPEILVV
TFTEAATEELRERIRDRLADAARIFADPHAEADDPVLAALLSDYSENEQRTSCAQRLDAA
AQWMDEAAIYTIHGFCNRMLKQHAFDSGSLFSLELQEDASEEQQLAARDYWRSVISQFPV
SAANALQNENLGNPDALLGACRPLLGLKEADPSALPQSVAHWLNQTGPQEERDQQARQQL
AHELPDFLEWVRAARDNKWLNGNSYRTTSLPGMLHTLQRYANGERLNGKAYDTLAKFSHE
GMKLTKAGQEHRPSFAFCQQLDAVMEGRANSALPRTELLTHAAAWIDQRVDQVRRQTATM
GFDDMLSRLHDALKGGNGERLAQVIRDQFPVALIDEFQDTDPTQYGIFSALYEEQQSTGW
FMIGDPKQAIYAFRGADVFTYLKARQATEGNHYTLDTNFRSSRTMVKAVNHLFHYSQSTF
GDVFMMDNAIPFNAVKANGRKDVLLIDKTEQSGITLWVDDKEKPVSAGQYRDEQAARCAS
EITHLLNGAVNGVTGFQKGDTFRPLHPNDIAILVRDRTEAKAIRDALMQRNVRSVYLSDQ
DSVFAQPEAHDLLLILHACAAPESDTRVRSALACAVLDLAYAELDALNQDEVRWEETVEQ
FHGYRQQWQNQGVLPMLRSLLMDFHVPARLSQNLDGERALTNLLHLAELLQQAATQLDGE
QSLIRYLEDTVESTVEAGRGSSKESILRLESDNDRVKVITIHKSKGLEYPLVYLPFICSF
RPADKNKPPLRYHENDHLNVSLEPDDTIQGKADHERLAEDMRLLYVALTRACHRCTLGLA
PYIKGRGKQNQLEKSAIGRLLFGNGVANDGLSAALAPVANDAVNIIKAPHSNTESYQPQA
QSQTLRPPLIPAPRQRQPWWIASYSALKQVQETLAPADPRGDQLAEQQDEQPAADVEPLA
DTIHAFPRGAAPGTLLHDVLEQAANQRFQQTLADPMDFETSVEEKLQARGWQDYTDVIRH
WWKQAVTTALPLSEGTVSLDTLHTYVPELEFLFPAHRVNVADMDTLIRQHVHPQHIAPHY
PRPKLEADTLNGMLKGFIDLVFEHEGKYYVLDYKSNWLGVDDSAYTLDAMTAAVLEKRYE
VQYVLYLLALHRLLKSRLPNYHPDQHLGGAVYVFLRGLQGPAAGTVFDRPDSELIEALDV
MFGGEE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgaacattgaacgtccgcttccgattacctttccactgcacggcacccggctgatcgaa
gccagtgcgggcaccggcaaaacctttaccttggccgctctttatctgcgcctagtactg
ggccatggaggcgaaaacgggttttcacgtccgctgctgccgccggaaattctggtggtc
acattcaccgaagccgccaccgaagaactacgcgaacgcatccgcgaccgcttggctgat
gccgcgcgcatttttgccgacccccacgctgaagccgacgatccagtgctggcggcactg
cttagcgattacagtgaaaacgaacaacgcaccagctgcgcccagcgcctggatgccgcc
gcccagtggatggacgaagccgccatctacaccatccacggcttctgcaaccgcatgctc
aaacagcacgccttcgactcgggcagcttgttcagcctggaattgcaggaagacgccagc
gaagagcagcaactggctgctcgagattactggcgctcggtgattagccaatttccagta
agcgcggccaatgccctgcaaaacgagaacttgggcaacccggacgccttgctgggagcc
tgtcggccgttactgggattgaaagaagccgacccgtcagcgttaccgcaaagcgtggct
cactggctgaaccaaaccggcccgcaagaggaacgggaccagcaggcccgccagcaactg
gcccacgaactgccggactttcttgaatgggtacgcgccgctcgcgacaacaaatggcta
aacggcaatagctaccgcaccaccagcctgcccggcatgctgcatacgctgcagcgctat
gccaatggcgaacggctcaacggcaaggcctatgacaccctggccaagttttcccacgaa
ggcatgaagctcaccaaggctggtcaagagcaccgcccgagctttgccttttgccaacaa
ctggatgcggtaatggaaggccgggcgaacagcgcactgccccgcaccgagctgctcacc
catgccgccgcctggatcgaccagcgcgtggatcaagtacgccggcaaaccgccaccatg
ggcttcgacgatatgctcagccgccttcacgacgccttgaagggcggtaatggcgaacgg
cttgcccaggtcatccgcgatcaatttccggtggcattgatcgacgaatttcaggatacc
gacccgacccagtacggcattttttccgccctttatgaagagcagcaaagcaccggctgg
tttatgatcggcgaccccaagcaagccatctatgccttccgaggcgccgacgttttcacc
tacctgaaagcgcgccaggccaccgaaggcaaccactacacgctggacaccaacttccgc
tcttctcgcactatggtgaaggcggtgaaccatctattccactacagccagagcaccttt
ggcgatgtgttcatgatggacaacgccatccccttcaacgccgtgaaagccaatggccgc
aaggatgttctgttgatcgacaagacagaacaatccggcattaccctgtgggtagacgac
aaggaaaagcccgtcagtgccggccagtaccgtgacgaacaggccgcacgctgcgccagt
gaaattacgcacctgcttaatggtgcggtcaacggcgttaccggatttcagaaaggcgac
accttccggcccttgcaccccaacgacatcgccattctggtgcgcgaccgcaccgaagcc
aaagccatccgcgatgcgttaatgcaacgcaatgtgcgcagcgtttatctgtccgatcag
gattccgttttcgcccagcccgaagcccatgatctgctgctgattctgcacgcctgcgcg
gccccggaatccgacactcgagtacgcagtgcccttgcctgcgccgtgctggatctggcc
tacgcggagctggatgccctcaaccaggatgaagtgcgctgggaagaaaccgtagagcag
ttccacggctaccggcagcaatggcaaaaccagggcgtgctgcccatgttgcgcagcctg
ctgatggatttccatgtgcccgcccggcttagccaaaacctggacggtgagcgtgccctg
actaacctgctgcacctggccgaactgttacagcaagccgctacccaattggatggcgag
caatccttgattcgttatcttgaagacactgtagaaagtacggttgaagcaggccgtggc
agcagcaaggaaagcatactgcgcttggaaagtgacaacgaccgggtaaaggtcatcacc
attcacaaatctaaagggctggaatacccgctggtgtatctgccttttatttgtagcttc
cgcccggcggacaaaaacaaaccacccctgcgttaccacgagaacgatcatctcaatgta
tcgctggaaccggacgacacaatacaaggcaaggcggatcacgagcgcctcgccgaagac
atgcgcctgctctatgtggcactgacccgcgcctgccaccgctgcacgctggggctggcc
ccctatatcaaaggccggggtaaacagaaccaattggaaaaaagcgccatcggccggtta
ctgttcggcaacggcgtggccaacgatggcttgagcgccgcccttgcacccgtcgcaaac
gatgccgtcaacatcattaaggcaccgcacagcaacaccgaatcgtatcagcctcaagcg
caatcacagaccctgcgcccgcccttgatacctgcgccccgccaacggcaaccctggtgg
attgccagctacagcgcgctcaaacaggtgcaggaaaccttggcacccgcggacccgcgc
ggggatcaattggcagaacaacaggacgaacaacccgccgcggatgtggaaccgttagcc
gataccatccacgctttcccacgcggcgcagcgccgggcacgctgctgcatgatgtgctt
gagcaggccgccaaccagcgcttccaacaaaccctggccgaccccatggactttgaaacc
agcgtggaagaaaaactccaggcccggggctggcaggattacaccgatgtcatccgccat
tggtggaagcaggcggtcaccactgcgctgccattaagcgaaggaaccgtctctctcgat
accctgcacacctatgtgccggagctggaattcctgtttcctgcccatcgagtcaacgtg
gccgacatggacaccctaatccgccagcacgttcacccacaacatattgccccgcactac
ccgcgcccaaaactggaagccgacaccctcaatggcatgctcaagggctttatcgacctg
gtgttcgaacacgagggcaaatactacgtgctcgactacaaatccaactggctgggcgta
gacgacagcgcctataccctggatgccatgaccgccgcggtgctggaaaaacgctacgaa
gtgcaatacgtgctttatctgctggccctgcatcgcctgctaaaaagccgcctaccgaat
taccacccggaccagcacctgggcggcgcggtttatgtgtttctgcgtggtttacaaggc
ccggcggcgggtaccgtattcgatcgaccggatagcgaactgatcgaagcgctggatgtc
atgtttgggggtgaggaatga
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