Agaricus bisporus var. bisporus H97: AGABI2DRAFT191117
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Entry
AGABI2DRAFT191117 CDS
T03140
Symbol
AGABI2DRAFT_191117
Name
(RefSeq) hypothetical protein
KO
K14284
nuclear RNA export factor
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03008
Ribosome biogenesis in eukaryotes
abv03013
Nucleocytoplasmic transport
abv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
AGABI2DRAFT191117 (AGABI2DRAFT_191117)
03015 mRNA surveillance pathway
AGABI2DRAFT191117 (AGABI2DRAFT_191117)
03008 Ribosome biogenesis in eukaryotes
AGABI2DRAFT191117 (AGABI2DRAFT_191117)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abv03019
]
AGABI2DRAFT191117 (AGABI2DRAFT_191117)
03009 Ribosome biogenesis [BR:
abv03009
]
AGABI2DRAFT191117 (AGABI2DRAFT_191117)
Messenger RNA biogenesis [BR:
abv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
AGABI2DRAFT191117 (AGABI2DRAFT_191117)
mRNA cycle factors
Stress granule specific factors
AGABI2DRAFT191117 (AGABI2DRAFT_191117)
Ribosome biogenesis [BR:
abv03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
AGABI2DRAFT191117 (AGABI2DRAFT_191117)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAP_C
LRR_4
LRR_9
LRR_8
Motif
Other DBs
NCBI-GeneID:
18081693
NCBI-ProteinID:
XP_006459040
JGI:
Agabi_varbisH97_2_191117
LinkDB
All DBs
Position
Unknown
AA seq
591 aa
AA seq
DB search
MFSTSTPASGSRTIASRALRRAGLVDSDTQMRDGDNDRRNAQRSRRRIRGTESAKEMATG
SFHRSLAARMSANARGTASDPLAIRGAARPTVAGRLRRRDADSVLASNRDGAVDAWRQMV
NARYNPETRFLDLSSMIDDEIIKKHSLSPPGHGGDVRTAAVIFKLAGQLQPEVQTLSLAN
NNLHGMHLLYLDRYLPKLRNLSLEGNALKTWRDLDHVGAKKDKMKCLRELVLIGTPIRDM
EYKNGRGDRYRSELARRFPALEVLDSETITQIGFTTETDLGQQQSVVPKPSATTFPYEMG
PSFITGVDGNLVSAFLFRFFEFFDTQRNGLLGVYDDQANFSYCCNTSIPVRARIENLHNT
LPNQRRLNWEKWLENSGGGSRNLNRQQVNVDKSVKLLHIGPPSIIAAQTALPETKHDVLG
SMQKFVVDAFPVPHGQGHALLVTLHGEFMEVRKQALRSFDRSFILLPAPEGSRAKLAGWD
VTILSDQLTIRGYSNPNVWKIGPMLVQAEAKSNPAQKPAAFVTSSLPLDQQATLNNLPDE
TQRNLVLQTCARTRLNVNFALDCLHGNAWDLERAITNFEQVKDKLPKDAYL
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgttttctacgtcaacccccgcctctgggtctaggaccatagcttcaagagcgctacgc
agagctggtctcgtggactccgacacacaaatgcgtgacggtgacaacgacaggagaaac
gcacaaaggtctcgcagaagaattcgcgggacagaatcagccaaggagatggccacagga
tcgtttcatcgctcgctcgccgcccgtatgtccgcaaatgctcgtggaacagcttccgat
cctctcgcgatacgcggagctgcaagacctactgtcgccggacgtctgcggagaagagac
gcagattccgtactcgcgtccaatcgtgatggtgctgtcgatgcctggcggcagatggtt
aatgcacgatacaatccggaaactcgctttcttgacctgagttcaatgatcgacgacgaa
atcatcaagaaacactcgctgtctccgccaggccatggtggtgatgtccgcacagccgct
gtcatctttaagctggcagggcagcttcagcccgaggttcaaacattatctctcgctaac
aataatttgcatggcatgcacctcctctacctcgaccgatatttgcccaagctccgcaat
ctttctctggagggtaatgccctcaaaacttggagagacttggaccatgtcggagcgaag
aaagataagatgaagtgtctgagagaattggtgttgatcggaacgccgatccgtgatatg
gaatataagaatggtcgcggagaccgttaccgaagcgaactggcccgacgcttccctgcg
cttgaagtcttggactctgaaaccatcacgcagatcggctttacgactgagacggacctc
ggccaacaacagtcagtcgttccgaagcccagcgcgacaaccttcccctatgaaatgggg
ccctcattcatcaccggcgttgatggtaatcttgttagcgcctttttattccggttcttc
gagtttttcgatacccagagaaacgggttgttaggtgtttatgatgatcaagcgaacttt
tcctattgctgcaataccagcattccagttcgtgcgcgcatagagaacctccataatacc
ctacccaatcaaaggaggttgaattgggagaagtggctggagaattcaggcggaggatcc
agaaatctcaatcgtcaacaagtcaatgttgacaaatcggtgaaactcttacacatcgga
cctcctagtatcatcgccgcccagaccgcactccccgagacgaagcatgacgtgttaggt
tctatgcagaagttcgttgtggatgcattcccagtaccccatggacagggacatgcgctt
ctggtgacacttcatggcgaattcatggaagtgaggaaacaagccttgcggtcgtttgat
cgatcatttattttgctccctgctcctgaaggctctagagcaaaattagcaggctgggat
gtaactatcttgtcggaccaactgacaatacgaggttactcgaatccaaacgtgtggaag
atagggcctatgttggtacaggctgaggccaaatcgaaccctgctcaaaaaccggcagca
tttgtcacatcatcacttccactcgatcaacaggcaacgttgaacaacctccccgacgaa
acgcagaggaatctggtgcttcagacatgtgcacgaacgaggctgaacgtgaacttcgcc
cttgactgcttgcatggcaatgcctgggatctggaaagagctattacaaactttgaacaa
gtgaaggataaacttccaaaagacgcatatctataa
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integrated database retrieval system
