Achromobacter sp. AONIH1: C2U31_25295
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Entry
C2U31_25295 CDS
T05288
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
achr
Achromobacter sp. AONIH1
Pathway
achr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
achr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C2U31_25295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achr03021
]
C2U31_25295
Transcription machinery [BR:
achr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C2U31_25295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
GerE
MitMem_reg
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AUT49015
UniProt:
A0A2I8DP21
LinkDB
All DBs
Position
complement(5536274..5538538)
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AA seq
754 aa
AA seq
DB search
MTKSTGKSSSAIDAAETKVTTAKRAVSMAAEKAPAKTAVKVAKPAAKTAVKKAAKTAAAD
KPEKATKTRAKKAEDKLADLVGSARPAPSGRRPGRPAKNANNDSDGFDDPMDGEGEVLPD
LKPPKRGGKRGKADPKDLIARGPVSAEEYEARRNRLKQLIKLGKDRGYLTYGEINDHLPD
DLVDAEAIDGIISTFSDMGIAVYDQAPDAETLLMSENAPVASNDDDVEDEAEAALTTVDS
DFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHVV
RVREGQAQIDEVVDGLVDPEDGEEYAGAGVSADEDESDDGPAGGMSSKQLEDLRVKALAK
FDEVGKQFDKMRLSYEKDGYKSDIYVRAQESIQNELMGIRFTAKMVEKLADTLRNQVEEV
RQLERAVLHTCVDRAGMPRTHFIKVFPGNETNLQWVMDEVAAGHPYAETLERQIPAVQEL
QQKLIDLQTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQ
FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI
NKMNRISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHLG
DFIEDTSTLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQF
DVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatccactggcaaatcctcctctgcaattgatgcggctgaaaccaaggtcacg
acggccaagcgcgccgtcagcatggcggcggaaaaagcgcccgccaagactgcggtgaag
gtcgccaagcccgctgcgaagacggccgtcaagaaggccgccaagaccgccgcggcggat
aagcccgagaaggccaccaagacccgcgccaagaaggccgaggacaagctggccgacctg
gtgggcagcgcgcgcccggcccccagcggccgccgtcctggtcgtccggccaagaacgcc
aacaatgattccgacggcttcgacgatccgatggacggcgaaggcgaagtcctgcccgac
ctgaagccgcccaagcgcggcggcaagcgcggcaaggccgatcccaaggacctgatcgcc
cgcggtccggtgtccgccgaggaatacgaagcccgccgcaaccgcctcaagcagctgatc
aagctgggcaaggaccgtggctacctgacctacggcgaaatcaacgaccatctgcctgac
gacctggtcgacgccgaggccatcgacggcatcatcagcaccttcagcgacatgggcatc
gcggtctatgaccaggctcccgacgctgaaacgctgctgatgagcgagaacgcgccggtc
gcgtccaacgacgacgacgtcgaggacgaagccgaagccgcgctgaccaccgtggattcc
gatttcggccgcaccaccgatcccgtgcgcatgtacatgcgtgaaatgggctcggtcgag
ctgctgacccgcgaaggcgaaatcgaaatcgccaagcgcatcgaagacggcctgaagcac
atggtcatggccatctcggcctgcccgaccaccatcaacgaaatcctggcacacgtcgtg
cgcgtgcgcgaaggccaggcccagatcgacgaagtcgtcgacggcctggtcgacccggaa
gacggcgaggaatacgccggcgccggcgtcagcgccgacgaagacgagagcgatgacggc
ccggccggcggcatgtccagcaagcagctggaagacctgcgcgtcaaggccctggccaag
ttcgacgaagtcggcaagcagttcgacaagatgcgcctgtcgtacgagaaggacggctac
aagtcggacatctacgtgcgcgcccaggaatccatccagaacgaactgatgggcatccgc
ttcaccgccaagatggtcgagaagctggctgacacgctgcgcaaccaggtcgaggaagtg
cgccagctcgagcgcgccgtcctgcacacgtgtgtggaccgtgccggcatgccgcgcacg
cacttcatcaaggtcttccccggcaacgaaaccaacctgcagtgggtgatggacgaagtc
gccgccggccatccctacgccgagacgcttgagcgccagatcccggccgtccaggaactg
cagcagaagctgatcgacctgcagacgcgcgtcgtgttgccgctcaaggacctgaaggac
gtcaacaagcgcatggccaccggcgaagccaaggcccgcaaggccaagcgcgaaatgacc
gaggccaacctgcgcctggtgatctcgatcgccaagaaatacacgaaccgcggcctgcag
ttcctggacctgattcaggaaggcaacatcggcctgatgaaggccgtggacaagttcgag
taccgtcgcggctacaagttctcgacctacgccacgtggtggatccgtcaggccatcacg
cgctccatcgccgaccaggcgcgcaccatccgtatcccggttcacatgatcgaaacgatc
aacaagatgaaccggatcagccgccagatcctgcaggaaaccggcgccgagccggatccc
gcgaccctggcgcagaagatggacatgccggaagacaagatccgcaagatcctgaagatc
gccaaggaaccgatctccatggaaacgccgatcggcgacgacgacgattcgcacttgggc
gacttcatcgaggacacctcgacgctggcgccttcggacgcggcgctgcacggctccatg
cgcgacgtggtcaaggaagtgctagactctctcaccccgcgtgaagccaaggtcctgcgc
atgcgtttcggcatcgaaatgagcaccgaccagaccctggaagaagtgggcaagcaattc
gacgtgacccgcgagcgcatccgccaaatagaagccaaggcactgcgcaagctgcgtcac
cccagccgggccgacaagctgaagagcttcctggaagggcagtaa
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