Acidovorax carolinensis NA2: CBP33_09555
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Entry
CBP33_09555 CDS
T04914
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acid
Acidovorax carolinensis NA2
Pathway
acid03030
DNA replication
acid03410
Base excision repair
acid03420
Nucleotide excision repair
acid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBP33_09555 (ligA)
03410 Base excision repair
CBP33_09555 (ligA)
03420 Nucleotide excision repair
CBP33_09555 (ligA)
03430 Mismatch repair
CBP33_09555 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acid03032
]
CBP33_09555 (ligA)
03400 DNA repair and recombination proteins [BR:
acid03400
]
CBP33_09555 (ligA)
Enzymes [BR:
acid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CBP33_09555 (ligA)
DNA replication proteins [BR:
acid03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CBP33_09555 (ligA)
DNA repair and recombination proteins [BR:
acid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CBP33_09555 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBP33_09555 (ligA)
MMR (mismatch excision repair)
DNA ligase
CBP33_09555 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CBP33_09555 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
ART48342
UniProt:
A0A240TRU4
LinkDB
All DBs
Position
2016495..2018606
Genome browser
AA seq
703 aa
AA seq
DB search
MTENFDLFSAAAPADIAQPAIKIKALRDQLNHWAHQYYVLDAPTVPDADYDRAFRELQAL
EAAHPELITPDSPTQRVIGAVMDGLAPVRHAVPMLSIHTETDTEATGAQAFDARVRRELG
LAESDPPVEYVAEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNVRTIRQIPLTLP
EGVPPLLEVRGEVYMRRADFDALNERQREQGGKTFVNPRNAAAGAVRQLDSGITAQRPLS
FFAYGLGAITPPAEGGPVFRTHYEMLQTLKSWGFPVAAQVQIAVGATELVAFHQQVGASR
DALPYDIDGVVYKVNSLQLQRDLGFKTREPRWAVAHKYPAQEMATRIEGIDVQVGRTGKI
TPVARLAPVFVGGVTVTNATLHNLFEIRKKGVRVGDQVIVRRAGDVIPEVVGVVPGNRAG
YVPNFKMPRTCPVCGSDVVREKGEANHRCTGGLFCAAQRKEAILHFAARRAMDIEGLGDK
LVDQLVDANVIRALPDLYRLGLTSLIALERMAEKSAQNVLAALEKSKQTTLPRFLFGLGL
RHVGEATAKDLARHFGTLDAIMDASVEQLLQVPDVGPVVAQSLHTFFQQPHNREVVEQLR
ACGVTWPEGAPAERAPQVLAGKTVVLTGTLPTLSRDAAKDMLEAAGAKVAGSVSKKTSYV
VAGEEAGSKLAKAQELGVPVLDEAGMLALLQHAGGTAAKEGAD
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaatttcgacctgttttcggccgcagcgcccgcagatattgcgcaaccagct
atcaaaataaaagcgctgcgcgaccagctcaaccactgggcgcaccagtattacgtgctg
gacgcgcccacggtgcccgacgccgactacgaccgcgcgttccgcgaactgcaggccctg
gaggccgcgcaccccgagctcataacccccgattcgcccacgcagcgggtgattggtgcg
gtgatggacggcctggcgcccgtgcgccacgcggtgcccatgctcagcattcacaccgag
accgacaccgaggccacgggtgcgcaggcgtttgatgcccgcgtgcggcgcgagctgggc
ctggcggaatccgacccgcccgtcgaatacgtggccgaacccaagttcgacggcctcgcc
atgagcctgcgctacgaaaacggccgcctggtgcaggccgccacgcgcggtgatggcgaa
gtgggcgaggacgtgacgcacaacgtccgcaccatccgtcagatccctttgaccctacca
gagggcgttccgccgctgctggaagtgcgcggtgaggtgtacatgcgccgtgccgacttc
gacgcgctcaacgagcgccagcgcgagcagggcggcaagacctttgtgaacccgcgcaat
gcggcggcgggtgctgtgcgccagctcgattccggcatcaccgcccaacggcccctgagc
ttttttgcctatggcctgggcgccatcacaccgcctgccgaaggtggcccggtgttccgc
acgcactacgagatgctgcagaccctgaaatcatggggttttccggtcgcagcgcaggtg
cagattgcagtaggcgctacggagttggtagcgtttcaccagcaggtgggtgccagccgc
gatgcgctgccgtacgacatcgacggcgtggtttacaaggtcaactccctgcagctgcag
cgcgacctgggtttcaagacccgcgagccgcgctgggccgtggcgcacaaatacccggca
caggaaatggccacgcgcatcgagggcatcgatgtacaggtgggccgcaccggcaagatc
acgccggtggcacgcctggcgcccgtgtttgtgggcggggtcaccgtcaccaacgccacg
ctgcacaacctgttcgagatccgcaagaagggtgtgcgcgtgggcgaccaggtcatcgtg
cgccgcgcgggcgatgtgattccggaggtcgtcggcgtggtgccgggcaatcgcgccggc
tatgtgcccaacttcaaaatgcccagaacctgccccgtatgcggcagcgacgtggtgcgc
gaaaagggcgaggccaaccaccgctgcacgggcggcctgttctgcgccgcacagcgcaag
gaagccatcctgcactttgccgcgcgccgcgccatggacatcgagggcctgggcgacaag
ctggtggaccagctggtggatgcgaacgtgatccgcgcgctgcccgacctgtaccggctg
gggctcacatccctgattgcgctggagcgcatggccgaaaaatcggcccagaacgtgctg
gctgcgctcgaaaaatccaagcaaaccacgctgccgcgctttctgttcggcctggggctg
cgccatgtgggcgaggccacggccaaggacctggcgcgccactttggcacgctggacgcc
atcatggatgccagcgtcgagcaattgctgcaggtgcccgacgtggggccggtggtggcg
cagagcctgcacaccttctttcagcagccgcacaaccgcgaggtggtcgagcagctgcgc
gcctgtggcgtgacctggcccgagggcgcccccgcagagcgcgcgccccaggtgctggcg
ggcaagacggtggtgctgaccggcaccttgcccaccctgagccgcgacgccgccaaagac
atgctcgaagccgccggcgccaaggtggccggttcggtcagcaaaaagaccagctatgtg
gtggcaggcgaggaagccggcagcaagctggccaaggcgcaggagctgggcgtgccggtg
ctggatgaggccggcatgctggcgctgttgcagcacgctggcggcacggccgcaaaagaa
ggcgccgactga
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