KEGG   Acidithiobacillus caldus ATCC 51756: Acaty_c0612
Entry
Acaty_c0612       CDS       T03561                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
acz  Acidithiobacillus caldus ATCC 51756
Pathway
acz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:acz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Acaty_c0612
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:acz03021]
    Acaty_c0612
   03400 DNA repair and recombination proteins [BR:acz03400]
    Acaty_c0612
Enzymes [BR:acz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Acaty_c0612
Transcription machinery [BR:acz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Acaty_c0612
DNA repair and recombination proteins [BR:acz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Acaty_c0612
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Peptidase_M23 Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: AIA54492
UniProt: A0A059ZX48
LinkDB
Position
614115..618263
AA seq 1382 aa
MKDLLKLFKQNDRQEEFDAIRIGIASPDKIRSWSYGEVKKPETINYRTFKPEREGLFCAK
IFGPIKDYECLCGKYKRLKHRGVVCEKCGVEVTQARVRRERMGHIELASPVAHIWFLKSL
PSRMGMILDMALRDIERVLYFEAYVVVDPGLTPLDRGTILSEDQYLDALEEHGDEFVAKM
GAEGIRDLLRAIPLKEEIEKTRTELQESNSDTKTKKLAKRLKILEAFETSGNRPEWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAIAGPNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LRLHQCGLPKKMALELFKPFIFNKLEERGLATTIKAAKRLVEQEKPEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLSLEAQLEA
RTLMMSTNNILSPANGEPIIVPSQDIVLGLYYVSQERAGAPGTGSVFADTAEVRRAYDTG
QVGLHARITMRFRGERVETTVGRALLADILPEGLPFSIINRVLKKKVIAELINTCYRTLG
VKDTVIFADQLMYTGYRMATRGGISFGAGDMVTPPEKETILARAEEEVKTIQEQYTSGLV
TEGERYNKVVDIWSRATDEVAKAMMDLVSKEKVVLADGKEVQQDSFNSIFMMADSGARGS
AAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANS
GYLTRRLVDVTQDLVVVEHDCGTEDGLPMMPLVEGGEVIEALRDRVLGRVTAEDIQHPNS
GEVVIPRNTLLTEKLLSTLDELGIDSLKVRSPLTCKSRHGVCALCYGRDLARGHLVNIGE
AVGVIAAQSIGEPGTQLTMRTFHIGGAASRAVSQSSIDIKQGGAIRYQPNLRLVTHPSGR
HVVVARNGEITVTDDQGREKERYKVPYGATILVDDGATVTAGKRIAEWDPHTRPIVSEIG
GRAVLKDVVEGVSVQVQSDDITGLSTWMVLDAKQRPAAGRDLRPMITLQDEQGQDLKLPG
TDLPARYFLPARAVLAVQEGSAVQPGDILARLPVGTSKTRDITGGLPRVAELFEARRPKD
FAIVAEHDGIVSFGKDTKGKQRLIITDEHNEQHEYLIPKGRHVTVHDGERVSPGEPLVEG
QPVPHDILRVLGVQALANYIVDEVQDVYRLQGVRINDKHIEVILRQMLRKVEITYAGDTS
FIPGDQVDRARVEEENAAAEAAGKEPARFTPMLLGITKASLSTESFISAASFQETTRVLT
EAAVAGKVDDLRGLKENVIVGRLIPAGTGLAYHEHRRRRNRGLPIMAEGESEPAESTVAE
LR
NT seq 4149 nt   +upstreamnt  +downstreamnt
ttgaaagatttactgaagctgttcaagcagaacgatcgccaggaagaattcgacgccatc
cgtatcggtatcgcgtcgccggataagatccggtcctggtcctacggcgaggtgaaaaag
cccgagaccatcaactaccgtaccttcaagcccgagcgggaaggcttgttctgcgccaag
atcttcggtcccatcaaggactacgaatgtctgtgcggcaagtacaagcgtctcaagcac
cgcggagtggtctgcgagaagtgcggcgtcgaggtgacccaggcgcgggtgcggcgcgag
cgcatggggcacatcgaactggccagccccgtcgcccatatctggttcctgaagtctctc
cccagccgcatgggcatgattctggacatggccctgcgggatatcgagcgcgtcctctac
ttcgaagcctacgtggtggtggacccgggtctgacgcccttggatcgcggtaccatcctc
agtgaagatcaatatctggacgcccttgaagagcatggcgatgagttcgtcgcaaagatg
ggtgccgagggtatccgcgatctgttgcgcgccattccgctcaaggaagagatcgagaag
acccgcacggagctgcaggagagcaattccgacaccaagaccaagaagctggccaagcgc
ttgaagatcctcgaggccttcgagacctccggcaatcgtcccgagtggatgatcatggag
gtattgccggtgctgccaccggatctgcggcccttggtacccctggacggtggccgtttt
gcgacctccgatctcaacgatctctaccgtcgggtcatcaatcggaacaaccgcctcaag
cgtttgctggagctcaaggccccggacatcattgtccgtaatgaaaagcgcatgctccag
gaggccgtggacgccctgctcgacaatggccgccgcggtcgggccatcgctggtcccaac
aagcggcccctgaagtctctggcggatatgatcaagggcaagcaggggcgtttccgtcag
aatctgctgggcaagcgggtggattattccggacgctcggtgatcgtggtggggccagag
ttgcgcctacaccagtgcggactacccaagaaaatggcgctggagctcttcaagcccttc
attttcaacaagctggaagagcgggggctcgccaccaccatcaaggcggccaaacgcttg
gtggaacaggagaaacccgaggtctgggatatcctggaagaggtcatccgcgagcatccg
gtcatgctcaaccgggcaccgaccctgcaccgtctgggcatccaggccttcgagccggtc
ctcatcgaaggcaaggccatccagctgcatcccttggtctgtgcagcctacaacgccgac
ttcgacggcgaccagatggcggtgcacgtgcccctgtcgctggaagcgcagctagaggcc
cggaccctcatgatgtccaccaacaacatcctgagccccgccaacggggagcccatcatc
gtaccctcccaagacatcgttctgggtctatactacgtcagccaggagcgcgcgggcgcg
ccgggtaccgggagcgtctttgcggacactgccgaggtgcgccgtgcctacgatacggga
caggtgggattgcatgcgcgcatcaccatgcgttttcgcggtgaacgggtagagacgacg
gtgggccgggcgctgctggccgatatcctgcccgagggcctgcccttcagcatcatcaat
cgcgtcctgaaaaagaaggtcatcgccgaactcatcaatacctgttaccgcactctgggc
gtgaaggatacggtgatctttgccgatcagctcatgtacaccggctatcgcatggccacc
cgcggtggtatctcctttggcgccggcgacatggtgacgccgccggaaaaggaaacgatc
ctcgcccgggccgaagaggaggtcaaaaccattcaggagcagtacacctcgggcctggtc
accgagggggagcgctacaacaaggtggtggacatctggtcgcgggcgaccgacgaggtg
gccaaggccatgatggatctggtgagcaaggaaaaggtggtgcttgccgatggcaaggag
gtccagcaagactccttcaactccatcttcatgatggccgactccggcgcccgtggttcg
gcggcgcagattcgccagctcgccggcatgcgcggcctgatggccaagcccgacggctcc
atcatcgagacgcccatcaccgcgaacttccgcgagggattgaacgtcctgcagtacttc
atctccacccacggcgcgcgcaagggtctggcagatacggccctgaagacagccaattcc
ggttatctcacccgccgtctggtggatgtcacccaggacttggtcgtggtggagcacgac
tgtggcacggaagatggcctgcccatgatgcccctggtggagggcggtgaagtcatcgag
gctctgcgcgatcgcgtcctcggccgggtcacggcggaggatatccagcaccccaatagc
ggtgaggtggtcatcccccgcaacaccctcttgacggagaagttgctgtctaccttggac
gagctgggtatcgactccctcaaggtgcgttcgccgctcacctgcaagtcgcgccacggc
gtgtgcgccctgtgctacggccgcgatctggcccgcgggcatctggtgaacatcggtgaa
gcagtgggcgtcatcgcggcgcagtccatcggtgagccgggcacacagctgaccatgcgc
accttccacatcggtggtgccgccagtcgggccgtgtcccagagcagtatcgacatcaag
cagggcggcgccattcgctatcagcccaacctgcgcttggtaacccaccccagcgggcga
cacgtggtggttgcccgcaatggcgagatcaccgtcaccgacgatcagggtcgagaaaag
gagcgttacaaggtcccctatggcgccaccatcctggtggacgacggtgccaccgtcacg
gcgggcaagcgtattgccgagtgggacccccacacgcgacccatcgtcagcgaaatcggt
ggacgggcggtgctcaaggatgtggtggagggtgtcagcgtacaggtgcagagcgacgat
atcacgggcctctccacctggatggtgctggacgccaagcagcgacctgctgccggtcgt
gacctgcggcccatgatcaccctgcaagacgagcaggggcaggacctgaagctccccggt
acggatctgccggcgcggtacttcctgccggcccgggcggtgttggcggtgcaggaaggc
tccgcggtacagcccggcgatattcttgcccgtttgcctgtgggtaccagtaaaacccgc
gacatcaccggcggtctgccgcgcgtggcggaactcttcgaggcgcgccggcccaaggac
tttgccatcgtcgccgaacacgacggtatcgtcagtttcggcaaggataccaagggcaag
cagcgccttatcatcaccgacgagcacaatgagcagcacgaatacctcatccccaagggc
cgtcacgtcacggttcacgatggcgagcgggtcagtcccggcgagcccctggtcgaaggt
cagccggttccccacgatatcctgcgggtactgggggtccaggctctggccaattacatc
gtcgatgaggtccaggacgtctaccgcctacagggtgtgcgcatcaacgacaagcacatc
gaggtgatcttgcggcagatgctgcgcaaggtggagatcacctacgctggtgacaccagc
ttcatcccgggagaccaggtggatcgtgcccgtgtggaagaggaaaacgcagcagcggaa
gcggcgggaaaggaacctgcgcgcttcacccccatgctgctgggtatcaccaaggcgagt
ctgtccaccgagtccttcatctcggcggcgagcttccaggagaccacccgggtgctcacg
gaagcggcagtggccggcaaggtggacgacctgcgcggtctcaaggagaacgtcatcgtc
ggtcgtctcattcctgctggcaccggcctcgcgtatcacgaacaccggcgccgtcgcaat
cgcggtctgccgatcatggcagagggcgaaagcgagcccgcagaaagcacggtggcggaa
ctgcgttaa

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