Alicycliphilus denitrificans BC: Alide_1309
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Entry
Alide_1309 CDS
T01397
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
adn
Alicycliphilus denitrificans BC
Pathway
adn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
adn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Alide_1309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
adn03400
]
Alide_1309
Enzymes [BR:
adn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Alide_1309
DNA repair and recombination proteins [BR:
adn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Alide_1309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ADU99070
UniProt:
A0AA85YER3
LinkDB
All DBs
Position
complement(1381312..1384803)
Genome browser
AA seq
1163 aa
AA seq
DB search
MQLPKLSPAKRFTLPRPVGSSDALLLARLGLQQKAEGRTTAIVTADAGDAQRLIDEIAFF
APDLRCALFPDWETLPYDSFSPHQDLISERLATLWRISQKDRDTGADVVLVPATTALYRL
APPSFLAGYTFHFKTGQRLDEARLRAQLTLAGYQHVSQVVGHGEYAVRGGLIDLFPMGSP
QPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDEAARAKFRQRWRELLEG
DPTRSRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGADATVVLHGDLEGAFQRFWQD
TRERYRLIQGDPDHPVLPPEALFLSADQFYGQAKPHAQLSLRPGVEDVQDNAQFQKLPDL
SVVRGADDPLARLQAHIHATPQRVLLLAESDGRRESLLDFLRASGLNPPAFDSLAEFQST
PEERVGIATAALATGFAWVEEGLDLVTETELFAAAPTTRRRKKQEQASDVEALIKDLSEL
KVGDPVVHNQHGIGRYRGLVHMDLGSKNPDGTPALQEFLHLEYADKAVLYVPVSQLQLIG
RYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDAAAELLNIYARRAARQGHAFRYSPQDY
EQFVADFGFEETADQKAAIHAVVQDMISPRPMDRLVCGDVGFGKTEVALRACFVAVTGGK
QVAFLAPTTLLAEQHYRTLCDRFAKWPVKVAEVSRFRSGKEITAAVKGIADGTVDIVVGT
HKLLSESTKFKNLGLLIIDEEHRFGVRHKEAMKQLRAEVDVLTLTATPIPRTMGMALEGL
RDLSVIATAPQRRLAIKTFVRSEGTGVIREAVLRELKRGGQCYFLHNEVETIENRRQKLE
EILPEARIAVAHGQMPERELEKVMRDFVAQRYNILLCSTIIETGIDVPSANTILISRADK
FGLAQLHQLRGRVGRSHHQAYAYLMVPDLDGLTKQAQQRLDAIQQMEELGSGFYLAMHDL
EIRGAGEVLGENQSGNMLEVGFQLYNEMLAEAVRCLKAGKEPDLLAPMQAATDINLHAPA
LLPDDYCGDVHLRLSFYKKLATARTSDQIDTLLEEIVDRFGKLPPQAQTLIDVHRLRVLS
APYGVVKVDAAPGIINITFKPRPPVDPMAIIGLIQKNKHIKLAGNEKLRIERALPDPAAR
AQMVRDVLRSLGQPLAETATVPA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcagctccccaaactctcccccgccaaacgattcaccttgccccgccccgtgggcagc
agcgacgcactgctgctggcccgcctggggctgcagcagaaggccgagggccgcaccacg
gccatcgtcacggccgatgccggcgacgcgcagcggctcatcgacgagatcgccttcttt
gcccccgatctgcgctgcgccctgttccccgactgggagaccctgccctacgacagcttc
tcgccgcaccaggacctgatcagcgagcgcctggcgacgctgtggcgcatctcccagaag
gacagggacacgggcgccgacgtggtgctggtgcccgccaccacggccctgtaccgcctg
gccccgccctcgttcctggcgggctacaccttccacttcaagaccgggcagcggctcgac
gaggccaggctgcgcgcccagctcacgctcgcgggctaccagcatgtgtcgcaggtcgtc
ggccatggcgagtacgcggtgcgcggcggcctcatcgatctgttccccatgggctcgccg
cagccctaccgggtggacctgttcgacgacgagatcgactcgatacgcaccttcgacccc
gacagccagcgcagcctgtaccccgtgcccgaggtgcgcctgctgcccgggcgcgagttc
cccatggacgaggcagcgcgcgccaagttccgccagcgctggcgcgagctgctggagggc
gaccccacgcgcagccgcatctacaaggacatgggcaacggcgtggccaccgccggcatc
gagtactacctgccgctgttcttcgacgagacggccaccgtgttcgactacctcggcgcc
gatgccaccgtggtgctgcacggcgacctggagggtgcgttccagcgcttctggcaggac
acgcgcgagcgctaccgcctgatccagggcgacccggaccaccccgtgctgccgcccgag
gcgctgttcctctcggccgaccagttctacggccaggccaagccccacgcccagctgtcg
ctgcgcccgggcgtggaggacgtgcaggacaacgcccagttccagaagctgcccgacctg
tccgtggtgcgcggcgccgacgacccgctcgccaggctccaggcccacatacacgccacg
ccgcagcgcgtgctgctgctggccgagagcgacggcaggcgcgagagcctgctggatttc
ctgcgcgcctcggggctgaacccgcccgcgttcgactcgctggccgagttccagtccacg
cccgaggagcgcgtgggcatcgccacggcggcgctggccacgggcttcgcctgggtcgag
gaaggcctggacctcgtcaccgagaccgagctcttcgccgccgcccccaccacgcgccgg
cgcaagaagcaggagcaggccagcgacgtggaggcgctgatcaaggacctgtcggagctc
aaggtgggcgatcccgtggtgcacaaccagcacggcataggccgctaccgcggcctagtc
cacatggacttaggaagcaagaaccccgacggcacgccggccctgcaagagtttttgcat
ctggaatacgccgacaaggccgtgctctacgtgcccgtgagccagctgcagctcatcggc
cgctacacgggcgtgtcggccgacgaggcgccgctgcacaagctgggcagcggccagtgg
gagaaggccaaacgcaaggccgccgagcaggtgcgcgacgcggcggccgagctgctcaac
atctacgcccggcgcgcggcgcgccagggccacgccttccgctactcgccgcaggactac
gaacagttcgtcgccgacttcggcttcgaggaaacggccgaccagaaggccgccatccac
gccgtggtgcaggacatgatcagcccgcgccccatggaccgcctggtctgcggcgacgtg
ggcttcggcaagaccgaggtcgccctgcgcgcctgcttcgtcgccgtgacgggcggcaag
caggtggccttcctcgcgcccaccacgctgctggccgagcagcactaccgcacgctgtgc
gaccgcttcgccaaatggcccgtgaaggtggccgaggtctcacgcttccgctcgggcaag
gagatcaccgcggcggtcaaaggcatcgccgacggcacggtggacatcgtcgtaggcacg
cacaagctgctttccgaatcgaccaagttcaagaacctgggcctgctcatcatcgacgag
gaacaccgcttcggcgtgcgccacaaggaggccatgaagcagctacgcgccgaggttgac
gtgctcacgctcacggccacgcccattccgcgcaccatgggcatggcgctggagggcctg
cgcgacctgtccgtgatcgccaccgcgccgcagcgccgcctggccatcaagaccttcgtg
aggagcgagggcacgggcgtgatccgcgaggccgtactgcgcgaattgaagcgcggcggc
cagtgctacttcctgcacaacgaggtcgagaccatagagaaccgccggcagaagctggag
gaaatactgcccgaggcgcgcatcgccgtggcccacggccagatgcccgagcgcgagctg
gagaaggtgatgcgcgacttcgtggcccagcgctacaacatcctgctgtgctcgaccatc
atcgagaccggcatcgacgtgcccagcgccaacaccatcctcatcagccgcgccgacaag
ttcggcctggcccagctgcaccagttgcgcgggcgcgtgggccgcagccaccaccaagcc
tacgcctacctgatggtgcccgacctggacggcctgaccaagcaggcccagcagcgcctg
gacgccatccagcagatggaggagttgggcagcggcttctacctcgccatgcacgacctg
gagatccgcggcgcaggcgaggtgttgggcgagaaccagagcggcaacatgctggaggtg
ggcttccagctctacaacgagatgctggccgaggccgtgcgctgcctcaaggccggcaag
gagcccgacctgctcgcgcccatgcaggccgccaccgacatcaacctgcatgcgcccgcg
ctgctgcccgacgactactgcggcgacgtgcacctgcgcctgtcgttctacaagaagctg
gccacagcgcgcaccagcgaccagatcgacacgctgctcgaagagatcgtggaccgcttc
ggcaagctgccgccccaggcgcagaccctcatcgacgtgcaccgcctgcgcgtgctctcc
gcgccctacggcgtggtcaaggtggatgcggccccgggcatcatcaacatcaccttcaag
ccccggccccccgtggacccgatggccatcatcgggctcatccagaagaacaagcacatc
aagctcgcgggcaacgaaaaactgcgcatagaacgcgcgctgcccgatccggcggcgcgc
gcgcagatggtgcgcgacgtgctgcgcagcctgggccagccgctggccgaaacggcaacc
gtgccggcctga
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