KEGG   Aeromonas salmonicida O23A: O23A_p1171
Entry
O23A_p1171        CDS       T04990                                 
Name
(GenBank) Transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
aeo  Aeromonas salmonicida O23A
Pathway
aeo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aeo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    O23A_p1171
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aeo03400]
    O23A_p1171
Enzymes [BR:aeo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     O23A_p1171
DNA repair and recombination proteins [BR:aeo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      O23A_p1171
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter MFD_D3 Helicase_C CarD_TRCF_RID ResIII UB2H ERCC3_RAD25_C RecG_dom3_C
Other DBs
NCBI-ProteinID: ARW81916
UniProt: A0A1Z1NMP5
LinkDB
Position
complement(1233962..1237417)
AA seq 1151 aa
MKLPALPAKAGQKLTLGQLTGSSLSLVAARLTTQANRPVLLVTADTPSALRLEQELQFLL
ADQGCPVLMFPDWETLPYDTFSPHQDIISQRLETLYKLPQMSAGVLIVPISTLMLRCAPQ
VYLDKYSLMVKAGQRLNLQQLRGRLAEAGYVAVDQVLEHGEFAARGSLLDLFPMGSNSPY
RIDFFDDEVDSIRPFDPETQRSSEPVKTVSLLPAREFPTDEAAIELFRGQFREQFELSRA
EGSVYQEVSKGRWPAGIEYYLPLFFHQTASLFDYLPDNTLLLTVGDIYPAAQRFWNDIGQ
RYEDRRWDNTRPLLPPQQIYLPVEQLFAALGHYGAVRLQEAATDGGAGQHDLPIAALPEL
QLDHSKEQPMLALNQFLDSFTGRTLFVVESEGRREVLGDLLARISLQPKEFPSLDAFMAG
KARHGLLVAPLERGFLLQEAGHDELALITETELLGGKVRSKRAREKSKNLSSDAVIRNLG
ELTQGQPVVHLDHGVGRYLGLETIDAGGLPTEFLTLEYAGGDKLFVPVTNLHLISRYTGS
DNPPSHKLGGEAWVKARRKAAEKVRDVAAELLDVYALRAARHGFAFQHDREAYRQFAAGF
PFEETEDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVLVP
TTLLAQQHYDNFRDRFANWPVRVEVLSRFRTAREQTSVMKELADGKVDIIIGTHKLLGSD
LTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMAGMRDLSIIA
TPPAKRLAIKTFVRQQDPAVTREAVLRELKRGGQVYYLHNDVESIEKCAGDLAELVPEAR
IGIAHGQMRERDLERVMSDFYHQRFNLLVCTTIIETGIDVPSANTIIMDRADHLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKLMSKDALKRLEAIASLEDLGAGFALATHDLEIRGAGE
LLGDDQSGQIESVGFTLYMEMLEQAVEALKNGKEPSLEQLMSQHTEVELRLPALLPEEYI
PDVNMRLSMYKRIASAADEQELRELKVELIDRFGLLPEATKTLMEIAAFRQRATALGIRR
VEMSERGGYLDFTQETRVNPGYLVKLLSEQPRIYKMDGPTRLRFQVPTPDRAMRLKLVDS
LLADLANHASH
NT seq 3456 nt   +upstreamnt  +downstreamnt
atgaagcttcccgccttgcccgccaaggcgggccaaaagttaacgctcggccagttgaca
ggcagcagcctttcactggttgccgcccgccttaccacccaagcgaaccgcccggtcctg
ctggtgaccgccgataccccgagtgccctgcgcctcgagcaggaattgcagttcctgctg
gccgatcaaggttgccctgtgctgatgttcccggattgggaaaccctgccctacgacacc
ttttcccctcatcaggacatcatctcccagcgactggagaccctctacaaactgccgcag
atgagcgccggcgtgctgatcgtgcccatctcgaccttgatgctgcgctgtgctcctcag
gtctacctcgacaagtacagcctgatggtgaaggccggtcagcgcctcaacctgcaacag
ttgcgaggacgtctggccgaggctggctatgtggcggtggatcaggtgctggagcacggc
gagtttgccgcccgcggctcactgctcgatctctttcccatgggcagcaacagcccctat
cgcatcgactttttcgatgacgaggtggactccatccgtccgttcgatcccgagacccaa
cgttccagcgaaccggtcaagacggtcagcctgttgcccgcccgggaattccccaccgac
gaggccgccatcgagctgttccgtgggcaatttcgcgaacagttcgaactgtcgcgcgcg
gaaggctccgtctatcaggaagtgagcaaggggcgctggcccgccggcatcgaatactac
ctaccgctcttcttccatcagaccgccagcctgttcgactacctgccggacaacaccctg
ctgctcacagtgggggatatctatcccgcggcccagcgtttctggaacgacataggccag
cgctatgaggacaggcgctgggacaacacccgccccttgttaccaccccagcagatctac
ctgccggtggagcaattgttcgccgccctcggtcactatggtgccgtgcggctgcaggaa
gccgccaccgacggcggcgccggccagcatgatctccccatagccgcgctgccggagctg
caactggatcacagcaaagagcagcccatgctggcgctgaaccagtttctggacagcttc
acgggccgcacactgttcgtggtggaatcagaaggacggcgggaagtgctcggcgatctg
ctggcgcgcatatccttgcaacccaaggagttcccctcgctggatgccttcatggcgggc
aaggcgcgccacggtctgctggttgcaccgctggagcggggttttctgctacaagaggcc
gggcatgatgagcttgcccttatcacggagacagagctgctgggcggtaaagtccgcagc
aagcgagcccgggaaaagagcaagaacttaagctcggatgcggtgatccgaaacctcggc
gagttgacccagggccagcctgtggttcacctggatcacggggtcggccgttatctgggg
ctcgaaaccatcgatgccggtggcctgcccaccgagttcctgaccctcgagtatgccggt
ggcgacaagctgttcgtgccggtcaccaacctgcacctcatcagccgctacacaggctct
gacaacccgcccagccacaaactcggcggcgaggcctgggtcaaggcgcggcgcaaggcg
gcagagaaggtgcgcgacgtggcagccgagctgctggatgtctatgccctgcgggcggcg
cgccacggttttgccttccagcacgacagggaggcctaccgccagttcgccgccggtttc
ccgttcgaggagacagaggatcagctcaacgccatcaatgcggtactgggagacatgtgc
caggccaagagcatggaccggctggtgtgcggcgacgtgggctttggcaagaccgaagtg
gcgatgcgagccgccttcgtggcggtccatggcggcaagcaggtcgccgtgctggtgccc
accactttgctcgcccagcagcactacgacaacttccgtgatcgcttcgccaactggccg
gtgcgggtcgaggtgctgagccgctttcgtaccgccagggagcagaccagcgtgatgaag
gagctggccgatggcaaggtcgacatcatcataggtacccacaagctcttgggctcagat
ctgaccttcaaggatttggggctgctcatcgtcgatgaggagcacagattcggggtgcgc
cagaaggagaagatcaaggcgctgcgggccgacgtcgatatccttaccctcacggcgacg
cctatcccgcgcaccctcaacatggcgatggccggcatgcgggatctctccatcatcgcc
accccacccgccaagcggctcgccatcaagacctttgtgcgccagcaggatcctgcggtc
acccgcgaggcggtactgcgtgagctcaagcggggcggtcaggtctactacctgcacaat
gacgtggagagcatagaaaaatgcgccggcgatctcgccgagctggtgccggaggcccgt
atcggcatcgcccacggccagatgcgcgaacgcgatcttgagcgagtcatgtcagacttc
taccaccagcgcttcaacctgctggtctgcaccaccatcatagagaccggcatagacgta
cccagcgccaacaccatcatcatggaccgagccgatcatctggggctggcccagttgcac
cagctgcggggccgggttggccgctcccaccaccaggcctatgcctacctgctcacccct
catcccaagttgatgagcaaggatgcactcaagcggctcgaggccatcgcatcgctcgaa
gatctcggcgccggttttgcgctggcgacccacgatctggagatccggggtgcaggagag
ctcttgggcgacgatcagagcggccagatcgaatcggtcggcttcactctctacatggag
atgctggagcaggcggtcgaggcgctgaaaaatggcaaggagccatcgctggagcagctg
atgagccagcacacagaggtcgagctgcgcctgcccgccctgttgccggaggagtacata
ccggacgtcaacatgcgtctgtccatgtacaagcgcatcgccagcgcggccgacgagcag
gagctgcgcgaattgaaggtggagctgatcgaccgcttcggcctgctgccggaggcgacc
aagacgctcatggagattgcggccttccgccagcgcgccaccgcccttggcattcgccgg
gtggagatgagcgagcgcggcggttacctggacttcactcaggagactcgcgtcaaccct
ggctatctggtcaagctgctctccgagcagccacgcatctacaagatggatgggcccacc
cgattgcgcttccaggtaccgaccccggaccgcgccatgcgcctgaaactggtggacagc
ctgctggcggatctcgccaaccacgccagccactga

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