Aeromonas salmonicida O23A: O23A_p1171
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Entry
O23A_p1171 CDS
T04990
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aeo
Aeromonas salmonicida O23A
Pathway
aeo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O23A_p1171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aeo03400
]
O23A_p1171
Enzymes [BR:
aeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O23A_p1171
DNA repair and recombination proteins [BR:
aeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O23A_p1171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ARW81916
UniProt:
A0A1Z1NMP5
LinkDB
All DBs
Position
complement(1233962..1237417)
Genome browser
AA seq
1151 aa
AA seq
DB search
MKLPALPAKAGQKLTLGQLTGSSLSLVAARLTTQANRPVLLVTADTPSALRLEQELQFLL
ADQGCPVLMFPDWETLPYDTFSPHQDIISQRLETLYKLPQMSAGVLIVPISTLMLRCAPQ
VYLDKYSLMVKAGQRLNLQQLRGRLAEAGYVAVDQVLEHGEFAARGSLLDLFPMGSNSPY
RIDFFDDEVDSIRPFDPETQRSSEPVKTVSLLPAREFPTDEAAIELFRGQFREQFELSRA
EGSVYQEVSKGRWPAGIEYYLPLFFHQTASLFDYLPDNTLLLTVGDIYPAAQRFWNDIGQ
RYEDRRWDNTRPLLPPQQIYLPVEQLFAALGHYGAVRLQEAATDGGAGQHDLPIAALPEL
QLDHSKEQPMLALNQFLDSFTGRTLFVVESEGRREVLGDLLARISLQPKEFPSLDAFMAG
KARHGLLVAPLERGFLLQEAGHDELALITETELLGGKVRSKRAREKSKNLSSDAVIRNLG
ELTQGQPVVHLDHGVGRYLGLETIDAGGLPTEFLTLEYAGGDKLFVPVTNLHLISRYTGS
DNPPSHKLGGEAWVKARRKAAEKVRDVAAELLDVYALRAARHGFAFQHDREAYRQFAAGF
PFEETEDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVLVP
TTLLAQQHYDNFRDRFANWPVRVEVLSRFRTAREQTSVMKELADGKVDIIIGTHKLLGSD
LTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMAGMRDLSIIA
TPPAKRLAIKTFVRQQDPAVTREAVLRELKRGGQVYYLHNDVESIEKCAGDLAELVPEAR
IGIAHGQMRERDLERVMSDFYHQRFNLLVCTTIIETGIDVPSANTIIMDRADHLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKLMSKDALKRLEAIASLEDLGAGFALATHDLEIRGAGE
LLGDDQSGQIESVGFTLYMEMLEQAVEALKNGKEPSLEQLMSQHTEVELRLPALLPEEYI
PDVNMRLSMYKRIASAADEQELRELKVELIDRFGLLPEATKTLMEIAAFRQRATALGIRR
VEMSERGGYLDFTQETRVNPGYLVKLLSEQPRIYKMDGPTRLRFQVPTPDRAMRLKLVDS
LLADLANHASH
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttcccgccttgcccgccaaggcgggccaaaagttaacgctcggccagttgaca
ggcagcagcctttcactggttgccgcccgccttaccacccaagcgaaccgcccggtcctg
ctggtgaccgccgataccccgagtgccctgcgcctcgagcaggaattgcagttcctgctg
gccgatcaaggttgccctgtgctgatgttcccggattgggaaaccctgccctacgacacc
ttttcccctcatcaggacatcatctcccagcgactggagaccctctacaaactgccgcag
atgagcgccggcgtgctgatcgtgcccatctcgaccttgatgctgcgctgtgctcctcag
gtctacctcgacaagtacagcctgatggtgaaggccggtcagcgcctcaacctgcaacag
ttgcgaggacgtctggccgaggctggctatgtggcggtggatcaggtgctggagcacggc
gagtttgccgcccgcggctcactgctcgatctctttcccatgggcagcaacagcccctat
cgcatcgactttttcgatgacgaggtggactccatccgtccgttcgatcccgagacccaa
cgttccagcgaaccggtcaagacggtcagcctgttgcccgcccgggaattccccaccgac
gaggccgccatcgagctgttccgtgggcaatttcgcgaacagttcgaactgtcgcgcgcg
gaaggctccgtctatcaggaagtgagcaaggggcgctggcccgccggcatcgaatactac
ctaccgctcttcttccatcagaccgccagcctgttcgactacctgccggacaacaccctg
ctgctcacagtgggggatatctatcccgcggcccagcgtttctggaacgacataggccag
cgctatgaggacaggcgctgggacaacacccgccccttgttaccaccccagcagatctac
ctgccggtggagcaattgttcgccgccctcggtcactatggtgccgtgcggctgcaggaa
gccgccaccgacggcggcgccggccagcatgatctccccatagccgcgctgccggagctg
caactggatcacagcaaagagcagcccatgctggcgctgaaccagtttctggacagcttc
acgggccgcacactgttcgtggtggaatcagaaggacggcgggaagtgctcggcgatctg
ctggcgcgcatatccttgcaacccaaggagttcccctcgctggatgccttcatggcgggc
aaggcgcgccacggtctgctggttgcaccgctggagcggggttttctgctacaagaggcc
gggcatgatgagcttgcccttatcacggagacagagctgctgggcggtaaagtccgcagc
aagcgagcccgggaaaagagcaagaacttaagctcggatgcggtgatccgaaacctcggc
gagttgacccagggccagcctgtggttcacctggatcacggggtcggccgttatctgggg
ctcgaaaccatcgatgccggtggcctgcccaccgagttcctgaccctcgagtatgccggt
ggcgacaagctgttcgtgccggtcaccaacctgcacctcatcagccgctacacaggctct
gacaacccgcccagccacaaactcggcggcgaggcctgggtcaaggcgcggcgcaaggcg
gcagagaaggtgcgcgacgtggcagccgagctgctggatgtctatgccctgcgggcggcg
cgccacggttttgccttccagcacgacagggaggcctaccgccagttcgccgccggtttc
ccgttcgaggagacagaggatcagctcaacgccatcaatgcggtactgggagacatgtgc
caggccaagagcatggaccggctggtgtgcggcgacgtgggctttggcaagaccgaagtg
gcgatgcgagccgccttcgtggcggtccatggcggcaagcaggtcgccgtgctggtgccc
accactttgctcgcccagcagcactacgacaacttccgtgatcgcttcgccaactggccg
gtgcgggtcgaggtgctgagccgctttcgtaccgccagggagcagaccagcgtgatgaag
gagctggccgatggcaaggtcgacatcatcataggtacccacaagctcttgggctcagat
ctgaccttcaaggatttggggctgctcatcgtcgatgaggagcacagattcggggtgcgc
cagaaggagaagatcaaggcgctgcgggccgacgtcgatatccttaccctcacggcgacg
cctatcccgcgcaccctcaacatggcgatggccggcatgcgggatctctccatcatcgcc
accccacccgccaagcggctcgccatcaagacctttgtgcgccagcaggatcctgcggtc
acccgcgaggcggtactgcgtgagctcaagcggggcggtcaggtctactacctgcacaat
gacgtggagagcatagaaaaatgcgccggcgatctcgccgagctggtgccggaggcccgt
atcggcatcgcccacggccagatgcgcgaacgcgatcttgagcgagtcatgtcagacttc
taccaccagcgcttcaacctgctggtctgcaccaccatcatagagaccggcatagacgta
cccagcgccaacaccatcatcatggaccgagccgatcatctggggctggcccagttgcac
cagctgcggggccgggttggccgctcccaccaccaggcctatgcctacctgctcacccct
catcccaagttgatgagcaaggatgcactcaagcggctcgaggccatcgcatcgctcgaa
gatctcggcgccggttttgcgctggcgacccacgatctggagatccggggtgcaggagag
ctcttgggcgacgatcagagcggccagatcgaatcggtcggcttcactctctacatggag
atgctggagcaggcggtcgaggcgctgaaaaatggcaaggagccatcgctggagcagctg
atgagccagcacacagaggtcgagctgcgcctgcccgccctgttgccggaggagtacata
ccggacgtcaacatgcgtctgtccatgtacaagcgcatcgccagcgcggccgacgagcag
gagctgcgcgaattgaaggtggagctgatcgaccgcttcggcctgctgccggaggcgacc
aagacgctcatggagattgcggccttccgccagcgcgccaccgcccttggcattcgccgg
gtggagatgagcgagcgcggcggttacctggacttcactcaggagactcgcgtcaaccct
ggctatctggtcaagctgctctccgagcagccacgcatctacaagatggatgggcccacc
cgattgcgcttccaggtaccgaccccggaccgcgccatgcgcctgaaactggtggacagc
ctgctggcggatctcgccaaccacgccagccactga
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integrated database retrieval system