Archaeoglobus fulgidus DSM 8774: AFULGI_00005000
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Entry
AFULGI_00005000 CDS
T03231
Name
(GenBank) RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
afg
Archaeoglobus fulgidus DSM 8774
Pathway
afg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFULGI_00005000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afg03019
]
AFULGI_00005000
Messenger RNA biogenesis [BR:
afg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AFULGI_00005000
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
AFULGI_00005000
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
RRP40_S1
S1
KH_6
KH_1
ECR1_N
KH_2
Motif
Other DBs
NCBI-ProteinID:
AIG97308
UniProt:
A0A075WIA6
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All DBs
Position
426725..427396
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AA seq
223 aa
AA seq
DB search
MRKIVLPGDLLSTNPRAAGYGTYVEGGKVYAKIIGLFDQTETHVRVIPLKGRYTPSVGDV
VIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKM
KVTLTMKDRICRPIRFGRIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGLIWVN
GDRRKVSIAEEAIYLIEQEAHTEGLTDRVAEFIKRRKADVGIQ
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagatagtactgccaggagatttgctttccacaaatccacgtgccgcaggttac
ggaacgtacgtggaaggtgggaaagtttacgcaaagataataggcctttttgatcaaacc
gagactcacgttagggtaatccctctgaaggggaggtacacaccttccgttggggatgtt
gtgatcggcataataagggaggttgccgccaacggctgggctgttgacatttactcaccc
tatcaggcctttttgcctgtaagcgagaatccggaaatgaagccgaacaagaaaccgaat
gaagttttggatataggtgatgcgatcatagcaaaggttctgaacattgacccaaaaatg
aaggtcactctgaccatgaaagacagaatctgcaggccgataaggttcggcaggatcgtt
gccatcaaccctgcaagggttccgagagtcatcggcaaaaaggggagcatgataaagctg
ctgaagagcgagctcgacgttcagatcgtcgttgggcagaacggtctgatatgggtgaac
ggagaccgcagaaaagtttccatcgccgaggaggcaatctaccttatcgagcaggaggct
catacggaaggtttaacagatagggttgcagaatttataaagaggaggaaggcagatgtc
ggaattcaatga
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