Acidaminococcus fermentans: Acfer_0974
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Entry
Acfer_0974 CDS
T01151
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
afn
Acidaminococcus fermentans
Pathway
afn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acfer_0974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afn03019
]
Acfer_0974
03016 Transfer RNA biogenesis [BR:
afn03016
]
Acfer_0974
Enzymes [BR:
afn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Acfer_0974
Messenger RNA biogenesis [BR:
afn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Acfer_0974
Transfer RNA biogenesis [BR:
afn03016
]
Prokaryotic type
tRNA degradation factors
Acfer_0974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADB47347
UniProt:
D2RJU5
LinkDB
All DBs
Position
1101239..1103710
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AA seq
823 aa
AA seq
DB search
MTNTEMETKILGYMKEHPTAPLSADELLQALTLEGADLKLFWTVMKELEDRGQVIKTRFN
IYGLPAAMGLVVGRCQVTSKGFAFVIPEEKTEDGDLFIPASSLSGAMDGDTVIARVMQSG
YDDRQEGKIIRILNRAHHKLVGTFSKSGEFGFVIPDNKRVGRDIYVRRKDFNGARDKEKV
VVEITTWPDERRNAEGKIVEILGKPGDIGLEILSIIKDNDLPTKFPAPVQVAAEKVEQKI
KKKEIQNRLDRRDWNIITIDGVDSKDLDDAVYVEKQGDNYFLGVYIADVSYYVQPHSVLD
QEAYERGTSVYLVDRVLPMLPVELSNGICSLNEGEDRLTMACEMLLDGKTGRTLSFTIAP
CVINNHHRMNYPDVRAILVDQDEALREKYADIVPMLEDMARLQQVLHKKRERRGAINFEL
PEQKVLLDDQKHPVAIVKRERSVAEMLIEEFMLAANETVAGFMARHKRPFIYRVHDLPDP
EKIQNLAKLMALFGVTLKVEEKMRPKDLQRALDKVAGKPEEKLVSTVALRSMRQAVYQTE
NIGHFGLAAHFYTHFTSPIRRYPDLMVHRLLRRQLDGERLSRQQAEERTQRLSLVASHCS
VRERAAIDAERQTVDLKMAEYMVQFVGKEFTGTISGVSSFGFFVELDNGVEGLVHVSSLN
DDYYDYIEGQYALIGQHLGHRYRLGDQVDIQVLQVDVAERKIDFVLAGLAPEAADQMRRE
LGRQKKTKTGIATGKLRNDTTGRKSGERKESGKKNSRGGRRKKKKNGSPRQNGTGLSQLV
PQETTPAGESGKKKKNNRRRRRRRDRKHGKTSEGNRRKPESQA
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatacagaaatggaaaccaagatcctggggtatatgaaggaacaccccacggct
cccttgtccgccgatgaactgctccaggccctgaccctggaaggggcggacctgaaactg
ttctggacagtgatgaaggagctggaagaccggggccaggtgatcaagacccggttcaac
atctatgggctgccggcggccatgggtctggtggtgggccgctgccaggtgaccagcaag
ggctttgcctttgtgatcccggaagaaaagacggaagacggggatctgttcatcccggcc
agcagcctcagcggcgccatggacggggatacggtgatcgcccgggtgatgcagagcggc
tatgatgaccggcaggaaggaaagatcatccggatcctgaaccgggcccatcacaaactg
gtggggaccttcagcaaatccggggaattcggcttcgtgatcccggacaacaaacgggtg
ggacgggacatctatgtgcgccggaaagacttcaacggggcccgggacaaggaaaaggtg
gtggtggagatcaccacctggccggacgaacggcggaacgcggaagggaagatcgtggag
atcctggggaaacccggggacatcggtctggaaatcctttccatcatcaaggacaacgac
ctgcccaccaaattcccggctcctgtccaggtggccgcggaaaaagtggaacagaagatc
aaaaagaaggaaatccagaaccggctggaccggcgggactggaacatcatcaccatcgac
ggagtggattccaaggacctggatgatgcggtgtatgtggaaaaacagggggacaactat
ttcctgggggtctacattgccgatgtaagctactatgtgcagccccattccgtcctggat
caggaagcctatgaacggggcaccagcgtgtacctggtggaccgggtgctgcccatgctg
ccggtggaactgagcaacggcatctgcagcctgaacgaaggggaagaccggctgaccatg
gcctgtgaaatgctcctggacgggaaaaccggccggaccctttcctttaccatcgccccc
tgtgtgatcaacaaccaccatcggatgaattatcccgatgtgcgggccatcctggtggac
caggatgaggccctgcgggaaaaatatgcggacatcgtccccatgctggaagacatggcc
cggctccagcaggtgctccacaagaaacgggaacggcggggcgccatcaacttcgagctg
ccggaacagaaggtgctgctggatgatcagaagcatccggtggccattgtgaagcgggaa
cggtccgtggccgagatgctcattgaagaattcatgctggccgccaacgaaacggtggcc
ggattcatggccagacacaaacggcctttcatttaccgtgtccacgacctgcctgatccg
gaaaagatccagaacctggccaaactcatggccctgttcggggtgaccctgaaggtggaa
gaaaagatgcggcccaaggatctccagcgggccctggacaaggtggccggaaaaccggaa
gagaagctggtttccacggtggccctgcggagcatgcgccaggcggtgtaccagacggaa
aacatcggccatttcggcctggcagcccatttctatacccatttcacttctcccatccgc
cgctatccggatctgatggtccaccggctcctgcgccgtcagctggacggagaacggctg
agccggcagcaggcggaagagcggacccagcggctgagcctggtggcctcccattgttcc
gtgcgggaacgggcggccatcgacgcggagcggcagacagtggatctgaaaatggccgaa
tacatggtccagttcgtggggaaggaattcaccgggaccatttccggggtttcctccttt
ggcttcttcgtggaactggacaacggggtggaaggactggtccatgtgtccagcctgaac
gatgactattatgactatatcgagggccagtatgccctgatcggccagcatctgggccac
cggtaccggctgggggaccaggtggatatccaggtgctccaggtggatgtggcggagcgg
aagattgattttgtcctggccggactggcgccggaagcggcggatcagatgcgccgggaa
ctgggacgtcagaaaaagaccaagaccggcattgccaccgggaagctgcggaatgacacc
accggccggaaatccggggaacggaaggaatccgggaagaaaaacagccggggcggacgc
cggaaaaagaagaagaacggctcccccagacaaaacgggaccggactgagccaattggtg
ccccaggaaacgactcctgcaggggaaagcggaaaaaagaagaaaaacaaccgccggcgg
cggagaagaagggatcggaaacatggaaaaaccagtgaaggcaatcgcagaaaaccggaa
agccaggcatga
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