Acidaminococcus fermentans: Acfer_1015
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Entry
Acfer_1015 CDS
T01151
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
afn
Acidaminococcus fermentans
Pathway
afn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acfer_1015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afn03019
]
Acfer_1015
03009 Ribosome biogenesis [BR:
afn03009
]
Acfer_1015
Enzymes [BR:
afn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Acfer_1015
Messenger RNA biogenesis [BR:
afn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Acfer_1015
Ribosome biogenesis [BR:
afn03009
]
Prokaryotic type
rRNA helicases
Acfer_1015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
ADB47385
UniProt:
D2RJY3
LinkDB
All DBs
Position
complement(1143806..1145440)
Genome browser
AA seq
544 aa
AA seq
DB search
MTEINKMENTTAESKPEITSFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLI
GQAQTGTGKTAAFGIPIIQKINEKDRHIQALVMSPTRELCIQVADEISKIGKTKRIRVLP
VYGGQPIERQIRSLKRGIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVD
DMENIIKNVPPERQTMLFSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYETR
DKVDGLCRILDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKK
FRSGQVDILVATDVAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFIT
PREFRQLKLIERSIKTKIIRGTLPTDASVLERQREQIVSKMQTILEQDRYQDYLPIVETL
EKDYDVQDIAAAALKFMQEGAKALEEPAEEESLPDALANTGAKPGMVRLFVNIGRSSRVT
VRDIVQSIAIEAEIPARSIGRISIYDKFSFVEVPMEHAEKVLAVMHRNTIRGCRVNMEPA
KARV
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaatcaataaaatggaaaatacaacggcggaatccaagccggaaatcacgtct
ttcgaagacctgaacctggaccggaagatcctggcagccctgaaggaaatgggctttgaa
gaaccgtcccccatccagaaaggcgccattcccatggccctggaaggggaggacctgatc
ggccaggcccagaccggtaccggcaagaccgcggctttcgggatccccatcatccagaag
atcaatgaaaaggaccggcacatccaggccctggtcatgagccccacccgggaactgtgc
atccaggtggcggacgaaatcagcaagatcggcaagaccaaacggatccgggtacttccg
gtgtacggcggccagcccatcgaacggcagatccgcagcctgaaacggggcatccaggtg
gtcatcgggactccgggccggctgctggaccatatccgccggggcaccatcgacctggaa
tacgtgaacttcctggtgctggatgaagccgatgaaatgctggatatgggctttgtggac
gatatggaaaacatcatcaagaacgttcccccggaacggcagaccatgctgttttccgcc
accatgccccggcccatcctgagcatcagcaagaaatacatgcgggctcccaaggtggtg
gccatccacaaggaagtggtgacggctcccaccatcgaccagtactattatgaaacccgg
gacaaagtggacggcctgtgccggatcctggacaccaccgacgactgcaagatgatcatc
ttctgccgcaccaaaaagggtgtggacgaactggtcatcgccctggccacccggggctac
gaggcggaaggcctccacggggacctgagccagaaccagcgggaccgggtgatgaagaag
ttccgcagcggccaggtggatatcctggtggctaccgatgtggcggccagagggctggat
atcgacaacatcacccatgtggtgaacttcgatgtgcccagtgacagcgaaagctacgtg
caccggatcggccgtaccggccgtgccgggaacaccggtgtggccctgaccttcatcact
ccccgggaattccgtcagctgaaactgatcgaacggagcatcaagaccaagatcatccgg
ggcaccctgcccaccgacgccagcgtactggaacggcagcgggaacagatcgtttccaag
atgcagaccatcctggaacaggatcggtaccaggattatctgcccattgtggaaaccctg
gaaaaggattatgatgtgcaggatatcgccgcggcagccctgaagttcatgcaggaaggg
gccaaggccctggaagaaccggcggaggaagaaagcctgccggatgccctggccaacacc
ggtgccaaaccggggatggtccgtctgttcgtgaacatcggccgttccagccgggtcacc
gtacgggatattgtccagagcattgccatcgaagcggaaatccctgcccggagcatcggc
cggatcagcatctacgacaaattcagctttgtggaagttcccatggaacatgcggaaaaa
gttctggccgtgatgcaccggaacaccatccggggctgccgggtgaacatggaacctgcc
aaagcacgggtataa
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