KEGG   Actinoplanes friuliensis: AFR_02060Help
Entry
AFR_02060         CDS       T02892                                 

Definition
(GenBank) putative ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
afs  Actinoplanes friuliensis
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:afs00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AFR_02060
Enzymes [BR:afs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AFR_02060
DNA repair and recombination proteins [BR:afs03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AFR_02060
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
439051..440004
Genome map
AA seq 317 aa AA seqDB search
MPGAPLSPMLATAGTLPRGPGWSYEFKWDGVRVLSSFSDGPPRLWARSGAAVTLAYPEVA
SLSLPPDSLLDGEMVVLDAAGRPSFTALAERMHVRDPGRAARLAATLPVTYMIFDLLRYD
GESLLGLPYADRRDRLEKLDLGPGSWMVPPAFTDGAATEAAARENKLEGVVAKRLDATYL
PGARSPDWIKVKFDRTGDYVIGGWRSGARKLGGLLVGVPGPDGRLRFRGRVGGGIGSASE
QELLAALAPLVTRESPFATGAVPREDSRGAHWVSPDLVVEVRYGNRTPDGRLRFPRFLRL
RPDKSPSECVEEDDDGS
NT seq 954 nt NT seq  +upstreamnt  +downstreamnt
gtgccgggtgcgccgctctcgccgatgctcgcgaccgcgggcacgctgccgcgtggcccg
ggctggagctacgagttcaagtgggacggcgttcgtgtcctctcgtcgttctccgacggc
ccaccacggctctgggcgcgctccggcgctgccgtaaccctcgcgtatcccgaggtcgcc
tcgctgtcgcttccgccggattcactcctggacggggagatggtcgtgctggacgcggcc
ggccggccgtcgttcaccgctctcgccgagcgcatgcacgtccgggatcccggccgggcc
gcccggctggcggcgaccctcccggtcacctacatgatcttcgacctgctccggtacgac
ggcgagtcactgctcggtctcccgtacgccgaccggcgcgatcgcctcgagaagctggac
ctgggcccggggtcgtggatggtgccgcccgcgttcaccgacggtgcggcgaccgaggct
gccgcccgggagaacaagctcgagggtgtcgtggcgaagcgcctggacgcgacgtacctg
ccgggggcgcggtcgccggactggatcaaggtcaagttcgaccggacgggcgactacgtc
atcgggggctggcgttccggcgcccgcaagctgggtggactgctggtgggcgtgcccggg
ccggacggccgcctgcgcttccggggccgggtcggtgggggcatcgggtcggcgtcggag
caggaactgctggcggcgctcgcaccgctggtcacgcgtgagtcgccgttcgccaccggt
gcggtgccccgcgaggactcccgcggtgcccactgggtcagccccgatctggtggtcgag
gtccgctacggcaaccgcacccccgacggccggttgcggtttccgcgtttcctgcggctg
cgcccggataagtctccgagcgagtgcgtggaggaggacgacgatggctcctag

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