KEGG   Actinoplanes friuliensis: AFR_24255Help
Entry
AFR_24255         CDS       T02892                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
afs  Actinoplanes friuliensis
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:afs00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AFR_24255
Enzymes [BR:afs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AFR_24255
DNA repair and recombination proteins [BR:afs03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AFR_24255
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: 
Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
5249632..5250906
Genome map
AA seq 424 aa AA seqDB search
MPGVRADLARLIRIPGIAFDGFDHTHVERSAAAVAELAAAADCRPTSSARVGNRRSSGTG
PHHPARTGRTRACTWPSSPGPASPRHFFSSGWAFRGPPAGYPARMPITDPLTPVEAGELD
SLGAGGSWTVFGRQLRVTNLDKVLFPGRDDRPPVTKRDFLRYTARIAPTLTPYLAGRPLN
LHRYPNGAQTKGFWHKELPAHAPAWLSRWDNPEADPGETRTYLVADEPAALVWAANFGAL
EWHPWTSRAEAPHRPTYALVDLDPGPATGWEDVLTLARLHRTAFEHLGVTARAKVTGRRG
IQIWVPIVNGPGFEETRAWVQELSRTVGAVVPELVSWKWQKSDRGGLARLDYTQNAINRT
LVAPYSPRPAPGAPVSAPIGWDELDDSALRPDGFTIDDVLERLAERGDLFHAVLDRPQVL
PPLT
NT seq 1275 nt NT seq  +upstreamnt  +downstreamnt
atgcccggggtccgggccgacctcgcacggctgatccgcatcccgggcatcgccttcgac
ggcttcgaccacacgcacgtcgaacggtccgccgcggccgtcgccgagctcgccgcggct
gcggactgcagaccgacatcgtccgcgcgggtgggcaaccgtcggtcctcgggcaccggc
ccgcaccacccggcgcgcacgggccgtacgagggcctgcacctggccgagttcacccgga
cctgcctcgccgaggcacttcttctcatcgggctgggcgttcaggggtccgccggcgggg
tacccagcccggatgccgatcacggatccgctcacgccggtggaggccggtgagctggac
tcgctgggcgccggcggctcctggacggtcttcggccggcagctgcgggtcaccaatctc
gacaaggtgctcttcccgggccgcgacgaccgcccgccggtcaccaagcgcgacttcctg
cgctacaccgcccggatcgcaccgaccctgacgccctatctggccgggcgcccgctgaac
ctgcaccggtacccgaacggcgcgcagaccaaggggttctggcacaaggagctgcccgct
cacgcgcccgcctggttgtcacgctgggacaatcccgaggcggatccgggcgagacacgg
acctacctggtggccgacgagccggccgccctggtctgggcggcgaacttcggggcgctg
gagtggcacccgtggacctcccgcgcggaggctccgcaccggccgacgtacgccctggtc
gacctggatcccggtcccgccaccgggtgggaggacgtgctgaccctggcccggctgcac
cgtacggcgttcgagcacctcggggtcaccgcccgggccaaggtcaccgggcgccgcggc
atccagatctgggtgcccatcgtcaacggcccgggtttcgaggagaccagggcctgggtc
caggagctgtcgcggacggtcggtgcggtcgtaccggaactcgtgagctggaagtggcag
aagagtgaccggggcggtctggcccggctggactacacgcagaacgcgatcaaccggacg
ctggtcgcgccctacagcccccgcccggcgccgggcgcaccggtgtccgccccgatcggc
tgggacgagctggacgattccgccctgcgcccggacgggttcacgatcgacgacgtcctg
gagcgcctggcggaacgcggtgacctgttccacgccgtcctggaccgtccgcaggtcctg
ccacccctcacctga

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