KEGG   Aeromonas hydrophila J-1: V469_09765
Entry
V469_09765        CDS       T03574                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
ahj  Aeromonas hydrophila J-1
Pathway
ahj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ahj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    V469_09765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ahj03400]
    V469_09765
Enzymes [BR:ahj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     V469_09765
DNA repair and recombination proteins [BR:ahj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      V469_09765
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter MFD_D3 Helicase_C CarD_TRCF_RID ResIII UB2H ERCC3_RAD25_C RecG_dom3_C
Other DBs
NCBI-ProteinID: AJE36149
LinkDB
Position
complement(2147051..2150515)
AA seq 1154 aa
MMPMKLPALPAKAGQKLTLGQLTGSSLSLMAARLTQEADRPVLLVTADTPSALRLEQELQ
YLLTDTGCPVLLFPDWETLPYDTFSPHQDIISQRLETLYKLPQMSSGVLIVPISTLMLRT
APRVYLDKYSLMVKSGQRLNLQQLRARLAEAGYVAVEQVLEHGEFAARGSLLDLFPMGSS
SPYRIDFFDDEVDSIRPFDPETQRSSEPVKSVSLLPAREFPTDEGAIELFRGQYREQFEI
SRAEGSVYQEVSKGRWPAGIEYYLPLFFQQTASLFDHLPDNTLLLTVGEIYPAAQRFWND
IAQRYEDRRWDNTRPLLPPQQIYLPVEQLFAALGQYAAVRLQEAPTAGDAGQHDLPISAL
PELQLDHSKEQPLLALNQFLQGFTGRTLFAVESEGRREVLGDLLARIALQPKEFASLDAF
ITSKARHGLLVAPLERGFLLREPGQEELALITETELLGGKIRSKRQREKSKNLSSDAVIR
NLGELTQGQPVVHLDHGVGRYLGLETIDAGGLPTEFLTLEYAGGDKLFVPVTSLHLISRY
TGSDNPPSHKLGGEAWVKARRKAAEKVRDVAAELLDVYAMRAARHGFAFKHDREAYRQFA
AGFPFEETDDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAV
LVPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRSAKEQTAVMKELAEGKVDIIIGTHKLL
GAELTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLS
IIATPPAKRLAIKTFVRQQEPAVTREAVLRELKRGGQVYYLHNDVESIEKCAADLAELVP
EARIGIAHGQMRERELERVMSDFYHQRFNLLVCTTIIETGIDVPSANTIIMDRADHLGLA
QLHQLRGRVGRSHHQAYAYLLTPHPKLMTKDAAKRLEAIASLEDLGAGFALATHDLEIRG
AGELLGDDQSGQIESVGFTLYMEMLEQAVEALKNGKEPSLEQLMSQHTEVELRLPALLPD
DYIPDVNMRLSMYKRIASATDEQELRELKVELIDRFGLLPEPTKTLLELAAFRQRATALG
IRRVEMSERGGYLDFTQETRVNPAYLVKLLSEQPRIYKMDGPTRLRFQVPTQDRAMRLKL
VDGLLADLASHASP
NT seq 3465 nt   +upstreamnt  +downstreamnt
atgatgccaatgaagcttcccgccttgcccgccaaggcgggccaaaagttaacgctcggc
cagctgacaggcagcagcctctcgctgatggccgcccgcctcacccaggaggcagatcgc
cccgtcctgctggtgaccgccgataccccgagcgccctgcgcctcgaacaggaactgcaa
tacctgctaaccgacacgggctgcccggtgctgctgttcccggactgggagaccttgccc
tacgacaccttctccccccatcaggacatcatctcccagcggctcgagaccctctacaag
ctgccgcagatgagcagcggcgtgctgatcgtgcccatctccaccctgatgctgcgcacg
gcgccccgggtctatctcgacaaatacagcctgatggtgaaaagcggccagcgcctcaat
ctgcagcagctgcgcgcgcgcctcgccgaggcgggctatgtggcggtggagcaggtgctg
gagcacggcgaatttgccgcccgcggctccctgctcgatctcttccccatgggcagcagc
agcccctatcgcatcgacttctttgacgacgaggtggactccatccgcccgttcgacccc
gagacccagcgctccagcgagccggtcaagagcgtcagcctgttgccagcccgggagttt
cccaccgacgagggggccatcgagctgtttcgtggccagtatcgcgagcagttcgagatc
tcccgcgccgagggctccgtctatcaggaggtgagcaaggggcgctggccggccggcatc
gaatactatctgccgctcttcttccagcagaccgccagcctgtttgaccacctgccggac
aacaccctgctgctgaccgtgggggagatctaccccgccgcccaacgcttctggaacgac
atcgctcaacgctacgaggacaggcgctgggacaatacccgtcccctgctgccaccccag
cagatctatctgccggtggagcagctgtttgcggcgctcggccaatacgcggccgtgcgg
ctgcaggaggcccccaccgccggtgatgcgggccagcacgacctgccgatctcggcactg
cccgagctgcagctcgatcacagcaaggagcagccgctgctggccctcaaccagttcctg
caaggttttaccggccgcaccctgtttgcggtggagtccgaggggcggcgcgaggtgctg
ggcgatctgctggcccgcatcgcgctgcagcccaaggagttcgcgtcactggacgccttc
atcaccagcaaggcccgtcacggcctgctggtggcaccgctcgagcgcggcttcttgctg
cgagagccggggcaagaggagctcgcgctcatcaccgagaccgaactgctgggcggcaag
atccgcagcaaacggcaacgggagaagagcaagaacctgagttcggatgcggtgatccgc
aacctcggcgagctgacccagggtcagccggtggtgcacctggaccacggggtcggccgc
tatctggggctggaaaccatcgatgccggcggcctgcccaccgagtttctgaccctggaa
tatgccggcggcgacaagctgttcgtgccggtcaccagtttgcatctgatcagccgttat
accggctcggacaacccgcccagccacaagctgggtggcgaggcctgggtcaaggcccgg
cgcaaggcggccgaaaaggtgcgcgacgtggcggccgagctgctcgatgtctatgccatg
cgggcggcccgtcacggctttgccttcaagcacgaccgcgaggcctatcgccagtttgcc
gccggcttcccgttcgaggagaccgatgaccagctcaacgccatcaatgcggtgctcggc
gacatgtgccaggccaagagcatggatcggctggtgtgcggcgacgtgggcttcggcaag
accgaggtggcgatgcgggcggcgtttgtggcagtgcatggcggcaagcaggtggccgtg
ctggtgcccaccaccctgctcgcccagcagcactacgacaacttccgcgaccgcttcgcc
aactggccggtgcgggtcgaggtgttgagccgcttccgctccgccaaggagcagaccgcc
gtgatgaaagagctggccgagggcaaggtggacatcatcatcggcacccacaaactgctc
ggcgccgagctcaccttcaaggatctgggcctgctcatcgtcgacgaggagcatcgcttc
ggggtgcgccagaaggagaagatcaaggcgctgcgggccgacgtggacatcctcaccctc
accgccacccccattccgcgcaccctcaacatggcgatgtcgggcatgcgggatctctcc
atcatcgccaccccgcccgccaagcggctcgccatcaagaccttcgtacgccagcaggag
ccggcggtcacccgcgaggcggtgctgcgggaattgaaacgtggcggccaggtctactac
ctgcacaacgacgtggagagcatcgagaagtgcgcggcggatcttgccgagctggtgccg
gaggcgcgcatcggcatcgcccacggccagatgcgcgagcgcgagctcgagcgggtgatg
tcggacttctaccaccagcgcttcaacctgctggtctgcaccaccatcatcgagaccggc
atcgacgtgccgagcgccaacaccatcatcatggatcgggcggatcatctcggtctggcc
cagctgcaccagctgcggggtcgggtcggccgttcccaccaccaggcctatgcctacctg
ctcaccccccatcccaagctgatgaccaaggatgcggccaagcggctggaggccattgca
tcccttgaagatctcggcgccggctttgcgctggccacccacgatctggagatccgcggc
gccggcgaactgctcggcgacgatcagagcggccagattgaatcggtcggcttcaccctc
tacatggagatgctggagcaggcggtcgaggcgctgaaaaatggcaaggagccgtcgctg
gaacagctcatgagccagcacaccgaggtggagctgcgcctgccggcgttgttgccggac
gactatattccggacgtcaacatgcgcctttccatgtacaaacggatcgccagcgcgacg
gacgagcaggagctgcgcgaactgaaggtggagctgatcgatcgcttcggcctgttgccg
gagccgaccaaaaccctgctggagctagccgccttccgccagcgcgctacggcgctgggc
attcgccgggtggagatgagcgagcgcggcggctatctggactttacccaggaaaccagg
gtcaaccctgcctatctggtcaagctgctctccgagcagccgcgcatctacaagatggac
ggaccgacccggctgcgcttccaggtgccgacccaggacagggccatgcgcctcaagctg
gtggacggcctgctggcggatctcgccagccacgccagcccctga

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