Aeromonas hydrophila J-1: V469_09765
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Entry
V469_09765 CDS
T03574
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ahj
Aeromonas hydrophila J-1
Pathway
ahj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ahj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V469_09765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahj03400
]
V469_09765
Enzymes [BR:
ahj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V469_09765
DNA repair and recombination proteins [BR:
ahj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
V469_09765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJE36149
LinkDB
All DBs
Position
complement(2147051..2150515)
Genome browser
AA seq
1154 aa
AA seq
DB search
MMPMKLPALPAKAGQKLTLGQLTGSSLSLMAARLTQEADRPVLLVTADTPSALRLEQELQ
YLLTDTGCPVLLFPDWETLPYDTFSPHQDIISQRLETLYKLPQMSSGVLIVPISTLMLRT
APRVYLDKYSLMVKSGQRLNLQQLRARLAEAGYVAVEQVLEHGEFAARGSLLDLFPMGSS
SPYRIDFFDDEVDSIRPFDPETQRSSEPVKSVSLLPAREFPTDEGAIELFRGQYREQFEI
SRAEGSVYQEVSKGRWPAGIEYYLPLFFQQTASLFDHLPDNTLLLTVGEIYPAAQRFWND
IAQRYEDRRWDNTRPLLPPQQIYLPVEQLFAALGQYAAVRLQEAPTAGDAGQHDLPISAL
PELQLDHSKEQPLLALNQFLQGFTGRTLFAVESEGRREVLGDLLARIALQPKEFASLDAF
ITSKARHGLLVAPLERGFLLREPGQEELALITETELLGGKIRSKRQREKSKNLSSDAVIR
NLGELTQGQPVVHLDHGVGRYLGLETIDAGGLPTEFLTLEYAGGDKLFVPVTSLHLISRY
TGSDNPPSHKLGGEAWVKARRKAAEKVRDVAAELLDVYAMRAARHGFAFKHDREAYRQFA
AGFPFEETDDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAV
LVPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRSAKEQTAVMKELAEGKVDIIIGTHKLL
GAELTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLS
IIATPPAKRLAIKTFVRQQEPAVTREAVLRELKRGGQVYYLHNDVESIEKCAADLAELVP
EARIGIAHGQMRERELERVMSDFYHQRFNLLVCTTIIETGIDVPSANTIIMDRADHLGLA
QLHQLRGRVGRSHHQAYAYLLTPHPKLMTKDAAKRLEAIASLEDLGAGFALATHDLEIRG
AGELLGDDQSGQIESVGFTLYMEMLEQAVEALKNGKEPSLEQLMSQHTEVELRLPALLPD
DYIPDVNMRLSMYKRIASATDEQELRELKVELIDRFGLLPEPTKTLLELAAFRQRATALG
IRRVEMSERGGYLDFTQETRVNPAYLVKLLSEQPRIYKMDGPTRLRFQVPTQDRAMRLKL
VDGLLADLASHASP
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgatgccaatgaagcttcccgccttgcccgccaaggcgggccaaaagttaacgctcggc
cagctgacaggcagcagcctctcgctgatggccgcccgcctcacccaggaggcagatcgc
cccgtcctgctggtgaccgccgataccccgagcgccctgcgcctcgaacaggaactgcaa
tacctgctaaccgacacgggctgcccggtgctgctgttcccggactgggagaccttgccc
tacgacaccttctccccccatcaggacatcatctcccagcggctcgagaccctctacaag
ctgccgcagatgagcagcggcgtgctgatcgtgcccatctccaccctgatgctgcgcacg
gcgccccgggtctatctcgacaaatacagcctgatggtgaaaagcggccagcgcctcaat
ctgcagcagctgcgcgcgcgcctcgccgaggcgggctatgtggcggtggagcaggtgctg
gagcacggcgaatttgccgcccgcggctccctgctcgatctcttccccatgggcagcagc
agcccctatcgcatcgacttctttgacgacgaggtggactccatccgcccgttcgacccc
gagacccagcgctccagcgagccggtcaagagcgtcagcctgttgccagcccgggagttt
cccaccgacgagggggccatcgagctgtttcgtggccagtatcgcgagcagttcgagatc
tcccgcgccgagggctccgtctatcaggaggtgagcaaggggcgctggccggccggcatc
gaatactatctgccgctcttcttccagcagaccgccagcctgtttgaccacctgccggac
aacaccctgctgctgaccgtgggggagatctaccccgccgcccaacgcttctggaacgac
atcgctcaacgctacgaggacaggcgctgggacaatacccgtcccctgctgccaccccag
cagatctatctgccggtggagcagctgtttgcggcgctcggccaatacgcggccgtgcgg
ctgcaggaggcccccaccgccggtgatgcgggccagcacgacctgccgatctcggcactg
cccgagctgcagctcgatcacagcaaggagcagccgctgctggccctcaaccagttcctg
caaggttttaccggccgcaccctgtttgcggtggagtccgaggggcggcgcgaggtgctg
ggcgatctgctggcccgcatcgcgctgcagcccaaggagttcgcgtcactggacgccttc
atcaccagcaaggcccgtcacggcctgctggtggcaccgctcgagcgcggcttcttgctg
cgagagccggggcaagaggagctcgcgctcatcaccgagaccgaactgctgggcggcaag
atccgcagcaaacggcaacgggagaagagcaagaacctgagttcggatgcggtgatccgc
aacctcggcgagctgacccagggtcagccggtggtgcacctggaccacggggtcggccgc
tatctggggctggaaaccatcgatgccggcggcctgcccaccgagtttctgaccctggaa
tatgccggcggcgacaagctgttcgtgccggtcaccagtttgcatctgatcagccgttat
accggctcggacaacccgcccagccacaagctgggtggcgaggcctgggtcaaggcccgg
cgcaaggcggccgaaaaggtgcgcgacgtggcggccgagctgctcgatgtctatgccatg
cgggcggcccgtcacggctttgccttcaagcacgaccgcgaggcctatcgccagtttgcc
gccggcttcccgttcgaggagaccgatgaccagctcaacgccatcaatgcggtgctcggc
gacatgtgccaggccaagagcatggatcggctggtgtgcggcgacgtgggcttcggcaag
accgaggtggcgatgcgggcggcgtttgtggcagtgcatggcggcaagcaggtggccgtg
ctggtgcccaccaccctgctcgcccagcagcactacgacaacttccgcgaccgcttcgcc
aactggccggtgcgggtcgaggtgttgagccgcttccgctccgccaaggagcagaccgcc
gtgatgaaagagctggccgagggcaaggtggacatcatcatcggcacccacaaactgctc
ggcgccgagctcaccttcaaggatctgggcctgctcatcgtcgacgaggagcatcgcttc
ggggtgcgccagaaggagaagatcaaggcgctgcgggccgacgtggacatcctcaccctc
accgccacccccattccgcgcaccctcaacatggcgatgtcgggcatgcgggatctctcc
atcatcgccaccccgcccgccaagcggctcgccatcaagaccttcgtacgccagcaggag
ccggcggtcacccgcgaggcggtgctgcgggaattgaaacgtggcggccaggtctactac
ctgcacaacgacgtggagagcatcgagaagtgcgcggcggatcttgccgagctggtgccg
gaggcgcgcatcggcatcgcccacggccagatgcgcgagcgcgagctcgagcgggtgatg
tcggacttctaccaccagcgcttcaacctgctggtctgcaccaccatcatcgagaccggc
atcgacgtgccgagcgccaacaccatcatcatggatcgggcggatcatctcggtctggcc
cagctgcaccagctgcggggtcgggtcggccgttcccaccaccaggcctatgcctacctg
ctcaccccccatcccaagctgatgaccaaggatgcggccaagcggctggaggccattgca
tcccttgaagatctcggcgccggctttgcgctggccacccacgatctggagatccgcggc
gccggcgaactgctcggcgacgatcagagcggccagattgaatcggtcggcttcaccctc
tacatggagatgctggagcaggcggtcgaggcgctgaaaaatggcaaggagccgtcgctg
gaacagctcatgagccagcacaccgaggtggagctgcgcctgccggcgttgttgccggac
gactatattccggacgtcaacatgcgcctttccatgtacaaacggatcgccagcgcgacg
gacgagcaggagctgcgcgaactgaaggtggagctgatcgatcgcttcggcctgttgccg
gagccgaccaaaaccctgctggagctagccgccttccgccagcgcgctacggcgctgggc
attcgccgggtggagatgagcgagcgcggcggctatctggactttacccaggaaaccagg
gtcaaccctgcctatctggtcaagctgctctccgagcagccgcgcatctacaagatggac
ggaccgacccggctgcgcttccaggtgccgacccaggacagggccatgcgcctcaagctg
gtggacggcctgctggcggatctcgccagccacgccagcccctga
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