Acidaminococcus intestini: Acin_0417
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Entry
Acin_0417 CDS
T01639
Name
(GenBank) DEAD-box ATP-dependent RNA helicase ydbR
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ain
Acidaminococcus intestini
Pathway
ain03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ain00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acin_0417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ain03019
]
Acin_0417
03009 Ribosome biogenesis [BR:
ain03009
]
Acin_0417
Enzymes [BR:
ain01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Acin_0417
Messenger RNA biogenesis [BR:
ain03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Acin_0417
Ribosome biogenesis [BR:
ain03009
]
Prokaryotic type
rRNA helicases
Acin_0417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEQ21659
UniProt:
G4Q8W1
LinkDB
All DBs
Position
435815..437059
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AA seq
414 aa
AA seq
DB search
MPSSFAQFAIAPSLVERLHQTGKDIPTPVQERAIPALLQGRDVICRAQTGVGKTLSFVVP
LFTKITEVKTFVQALILSPTRELAQQTAGEIKKLADGTPVRVLAVSGGKDYDEERRKLGN
KANVLVGTPGRLLDHLRKGNTSLGGITYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTM
MCSATLDEEVRKLGKMITKNPRLIDIDPKEATASTIHQVCIKVSEDHKEEALQTIIDRCN
PFLMLVFCKSKERAIEVYDWLYGKGFNADVLHGDMSQQKRRQAMERFRKAKTQILVASDI
AARGLDVEGVTQVVNFDIPHDPDWYVHRIGRTGRAGNEGEAITFYTADETRWLTHLEDKL
GITLERQNLAGEKVRRTVKPVRPKKKRLPKRGKSAVGSNKRGTKYAEASRKQKK
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgccaagtagttttgctcaatttgcgattgcgccttctcttgttgaacgactccatcag
actggaaaggatattccgacgcctgtgcaggaacgcgccatccccgcccttttgcaggga
cgggacgtcatttgccgcgcccagacgggggtggggaagaccctttcctttgtcgtgcct
ctttttacaaaaattacggaagtaaagaccttcgtccaggccctcattctttccccgaca
agggagctggcccagcagacggcaggtgaaatcaagaagcttgctgacggcacgccagtc
cgcgtccttgccgtgagcggcggcaaggactatgacgaagaacggcggaaactgggcaat
aaggccaacgtccttgtggggacgccaggtcgcctcttggaccacttgcgcaagggcaac
acgagccttggcggcataacttaccttgtccttgacgaagtggacgaaatgctgcgccaa
ggctttggcgaggatattgaaaccttgctgtcccttatgccccagccccatcagaccatg
atgtgctcggcaacccttgatgaagaagtgcggaaacttggcaagatgatcaccaagaat
ccccgcctcattgacatcgatcccaaggaagcgacggcatcgaccatccaccaggtctgc
atcaaagtaagtgaggaccataaggaagaagccctccaaaccatcattgatcgctgcaat
cccttcctcatgctcgttttctgcaagagcaaggaacgagctatcgaggtctacgactgg
ctctatggcaaaggcttcaatgccgatgtccttcacggcgatatgtcccagcagaaacgg
cgccaagctatggaacgcttccgtaaggccaagacccagatccttgtggcaagcgatatt
gccgcccgcggtcttgatgtggaaggcgtgacccaggtcgtgaactttgatattccccat
gaccctgattggtacgtccatcgcattggcagaacgggacgggccggcaacgaaggggag
gccatcaccttttatacagctgatgagactcgctggctgacccatcttgaagataagctc
ggcatcaccttggagcggcagaaccttgccggtgaaaaggtgcggcggaccgtaaagccc
gtgcgccccaagaaaaagcggctccctaaacgcggcaagagtgccgtcgggtccaacaaa
cggggaacaaaatacgccgaagcttcgcgcaaacagaagaagtga
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