Acinetobacter junii: BVL33_05575
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Entry
BVL33_05575 CDS
T04674
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ajn
Acinetobacter junii
Pathway
ajn03030
DNA replication
ajn03410
Base excision repair
ajn03420
Nucleotide excision repair
ajn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ajn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BVL33_05575 (ligA)
03410 Base excision repair
BVL33_05575 (ligA)
03420 Nucleotide excision repair
BVL33_05575 (ligA)
03430 Mismatch repair
BVL33_05575 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ajn03032
]
BVL33_05575 (ligA)
03400 DNA repair and recombination proteins [BR:
ajn03400
]
BVL33_05575 (ligA)
Enzymes [BR:
ajn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BVL33_05575 (ligA)
DNA replication proteins [BR:
ajn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BVL33_05575 (ligA)
DNA repair and recombination proteins [BR:
ajn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BVL33_05575 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BVL33_05575 (ligA)
MMR (mismatch excision repair)
DNA ligase
BVL33_05575 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BVL33_05575 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
APU48011
LinkDB
All DBs
Position
1143362..1145395
Genome browser
AA seq
677 aa
AA seq
DB search
MEQNSVIEQMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQHPECIQADTP
TNKVGGQALSKFESVTHAVPMLSLGNVFNQEDLFAFARRIDERLPNQKVQYEVELKLDGL
AISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSSQHQAIPEFLEVRGEVLMP
KQGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCVPNHGLE
TMHDSLHWLTKFGFEIAERQFLCASIEEVQQRYEQIQQERPDLKVEIDGMVIKVDSLKQQ
QQLGFLSREPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLAPVFVGGVTVSNVT
LHNIGEIHRLDVRVGDTVSVYRTGDVIPKVEKVWAEFRPADAEIVHLPTNCPVCDSPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHL
HEHRDTLLTIEKMGEKSVQNLIDAIEASKKTTLARFIYGLGIRGVGETTARMLANTFQTL
DALKVADVEALKKTPDVGDITAEWIADFFQAPHNIEVLDRLLAAGIHWDAPTAPTRQPLN
GESWVVTGTLETMGRDEATQKLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAQKLDIRV
MNEQEFLDFLAQYGGVE
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaactcagttattgagcaaatgcgtcagttaattcaactgattgcaaaacat
aatcatgcttattatgtgatggatcaaccttccatttctgatagtgaatatgaccattta
tttcatcaactgaaagccttagaacaacaacatccagaatgtattcaggcagataccccg
accaataaagtcggtggtcaagcgttgtcaaaatttgaaagcgtgactcatgcagtgccg
atgctgtctttaggtaatgtgtttaatcaggaagacctgtttgcctttgcacgccgtatt
gatgagcgtttacctaatcaaaaagttcaatatgaagttgaacttaaactcgatggctta
gcgatttcactgtggtatgaaaatggtgtattggttcgtggggtcactcgtggcgatggt
gagacaggtgaagacattactcaaaatgttaaaaccattcggaatctacctaaagtatta
tccagtcagcatcaagcgattccagagtttcttgaggtgcgtggtgaagtgctgatgcca
aagcaaggctttgaaaagctcaatgccgatcaagaagccaaaggcgagaagacttttgcg
aatccacggaatgccgcagcaggaagtctaaggcagcttgatccaaatatcgcagcctca
cgtccattggcgttctatgcgtatggtatcgcgcagtgtgtaccgaatcatggactggag
accatgcatgatagtctgcattggttgaccaaatttggttttgaaattgctgaacgtcaa
ttcttgtgtgcttcgattgaagaagttcaacagcgttatgaacaaatccaacaagagcgc
ccagatcttaaagtcgaaattgatggtatggtgattaaggtggacagccttaaacagcaa
caacaattgggctttttaagtcgtgaacctcgttgggcaacagcttataaattcccagca
caagccgctttaaccaaagttgagaatattgactggcaagtgggcagaacaggaacttta
acgcctgttgcgcgtttagcacctgtcttcgtaggtggtgtgactgtatcgaatgtgact
ttacataacattggtgaaatccaccgtttagatgtacgtgtaggcgatactgtgagtgtc
taccgtactggtgatgtgattccaaaagttgaaaaagtttgggctgagtttcgacctgcc
gatgctgaaattgtgcatcttccgaccaattgtccagtctgtgattcacctgtagttatg
ccagaaggtgaggcattggcacgttgttcgggtggcctgtattgtgcagcacaacggatt
gaagccattcgtcactttgtatcccgtaaagccttggatattgaaggcttaggtgatcgt
tgggtagagtcgttattacatctcgatttactcaaagatgtcgctgatatttatcatttg
catgaacatcgtgacaccttattgaccatcgagaaaatgggtgaaaaatccgttcaaaat
ctgattgatgcaatcgaagcaagtaagaaaaccaccttggcacgttttatttatggctta
ggtattcgtggtgtcggtgaaactacagcacgcatgttagccaatactttccaaactttg
gatgctttgaaagtagccgatgttgaagcacttaagaaaacgccagatgtcggtgatatt
acagcagagtggattgctgactttttccaagcaccacataacattgaagtactcgatcgt
ttattggcagcaggaattcattgggatgcaccgactgcgccaacacgtcaaccattgaat
ggtgagagttgggtggtgacgggtacactggaaactatggggcgtgatgaggcgacacaa
aagttacaagctttgggtgcacgtgtcagtggtagtgtttccagtaaaaccaaatgtgtc
gttgctggcgagaaagcaggaagtaagctagataaagcacagaaactggacattcgggtg
atgaatgaacaagaatttctggatttcttggcgcagtacggaggtgttgaatga
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integrated database retrieval system
