KEGG   Amycolatopsis lurida: BB31_15980Help
Entry
BB31_15980        CDS       T03710                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
alu  Amycolatopsis lurida
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:alu00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BB31_15980
Enzymes [BR:alu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BB31_15980
DNA repair and recombination proteins [BR:alu03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BB31_15980
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
3283055..3285118
Genome map
AA seq 687 aa AA seqDB search
MARKSADGRDEANTPGWVEPMLAKPDGGRLRVGPEWAYEYKLDGYRACMRVAADGTTVLT
SRNGIDFTDEFPDLAGVLTEALDGRSAVLDGEVVVYNDAGQIDFGMLQERRGRYQTHRSS
VRREEPFEDVPVRFLAFDLLRLGGISLLAEPYDERRRRLTRLPMPDPYRVEVVRGFTFTD
LAADRRTPWHLLEHVKASGHEGLIAKLRTAAYTPGRRSDAWAKHPLIQTTEVIVCGYRPG
QGRLHGRMGGLLLGAHDPDTGDLVYLGDVGTGFTEAERGRLQARLDALERKRPPFAVAPP
RADTARARWVKPVLVGEVVFRQFTRGAGRLRHTSWRGLREDKPPAEVLAPRREVISAAGS
RTEAPSPDDHVKAGPVAGEQPVASPTRGTKITVQAGERRLTLSNLDKVLYPDGFTKGEVI
NYYSRIAPALLPHLACRPVTFIRFPDGVGGEQFFEKNVPHGAPGWLPTVRIARGGTRGPG
EPITYALLDELAAVVWAANMAALELHVPQWTVADDGTRRPPDRLVFDLDPGPGTSIVHCC
RVAERLYDALAEDGLSPLAKTSGSKGMQLYCAVTTGDPAAPSAYAKKLAQRLARETPDRV
TAVMAKAQRTGRVFIDWSQNNPAKTTVAPYSLRGRDRPTVSTPVTWDEVRACRRATQLVF
TADDVLDRVDEYGDLLAELDDTRAALP
NT seq 2064 nt NT seq  +upstreamnt  +downstreamnt
atggcgcggaagtcggcagacggccgggatgaagcgaatacgcccgggtgggtggagccg
atgctggccaagcccgatggtggccggctgcgtgtgggaccggagtgggcgtacgagtac
aagctcgacggctaccgggcgtgcatgagggtcgccgccgacggcacgacggtcttgacc
agtcgcaacgggatcgacttcaccgacgagttcccggacctcgccggggtgctcaccgag
gccttggacgggcggagcgccgtgctggacggtgaggtcgtcgtctacaacgacgcgggc
cagatcgacttcgggatgttgcaggagcgccgcggccgctatcagacccatcgcagttct
gttcgccgcgaggagccgttcgaggacgtgccggtccggttcctggccttcgacctgctg
cggctcggcggcatctccttgctggccgagccgtacgacgaacggcgccgccggctgacg
cgacttccgatgccggacccgtaccgggtggaagtggtgcgcgggttcaccttcaccgac
ctcgccgccgaccgccggactccgtggcatctgctcgagcatgtgaaggccagtggccac
gaaggtttgatcgcgaagcttcgcaccgccgcctacaccccgggccgccgcagcgacgcc
tgggcgaaacacccgctgatccagacgaccgaggtgatcgtctgcggttaccggccgggg
cagggacggctgcacggaagaatgggcgggctgttgctgggcgcccacgacccggacacc
ggcgacctggtctacctcggtgacgtcggcaccgggttcaccgaggccgaacgcggccgc
ctgcaggcccggctcgacgcactggagcggaaacggcccccgttcgccgtggcgccgccc
cgggccgacaccgcgcgggcgcgctgggtgaaaccggtcctggtgggcgaggtggtgttc
cggcagttcacccgcggcgcgggccgcctgcggcacacctcgtggcgcgggctgcgcgag
gacaaacctcccgccgaggtcctggcaccgcggcgggaagtgatttccgccgccgggtct
cgaaccgaggcgccttctccggacgaccacgtgaaggcagggccggtggccggggaacag
cccgtggcgtcgccgacgaggggaacgaagatcaccgtacaggccggtgagcggcggctg
acactgtccaatctggacaaggtcctgtacccggacgggttcaccaagggcgaggtcatc
aactactactcccggatcgcgccggccctgctgccgcatctggcctgccgtccggtgacg
ttcatccggttccccgacggggtcggcggtgaacagttcttcgaaaagaacgtcccgcac
ggggcgcctgggtggttgccgaccgtccggatcgcgcgcggcggcacccgtgggccgggg
gagccgatcacgtacgcgttgctggacgaactggccgccgtggtgtgggcggcgaacatg
gccgcgctcgaactccacgttccacaatggactgtcgccgacgacggtacccgccgtccg
ccggaccgcctggtgttcgatctcgaccccggcccgggaacctcgatcgtgcactgctgc
cgcgtcgccgaacggctgtacgacgcactggcggaagacggactgtccccgctggcgaag
acatccggttcgaagggcatgcagctctactgcgccgtcaccaccggcgaccccgcggct
ccgtcggcctatgccaagaaactcgcgcagcgcctggcccgcgagacaccggaccgggtg
accgccgtgatggccaaagcacagcggaccgggcgggtgttcatcgactggtcacagaac
aaccccgccaagaccacggtggcgccgtactcgctgcgcggccgcgaccgtcccaccgtc
tcgacccccgtcacctgggacgaggtccgcgcctgccgccgcgcgacacagctggtgttc
accgccgacgacgtgctcgaccgcgtcgacgaatacggtgacctgctcgccgaactcgac
gacacccgggccgctctgccatga

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