Alteromonas mediterranea U4: I607_00920
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Entry
I607_00920 CDS
T02720
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
amal
Alteromonas mediterranea U4
Pathway
amal03420
Nucleotide excision repair
amal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I607_00920
03430 Mismatch repair
I607_00920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amal03400
]
I607_00920
Enzymes [BR:
amal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I607_00920
DNA repair and recombination proteins [BR:
amal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I607_00920
MMR (mismatch excision repair)
Other MMR factors
I607_00920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AGP83996
LinkDB
All DBs
Position
complement(204175..206346)
Genome browser
AA seq
723 aa
AA seq
DB search
MDVSRLLDELNDKQREAVAAPLSNALVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILAV
TFTNKAAKEMRGRIESLMGRSLHNMWIGTFHGLAHRLLRAHHAEANLPENFQIIDSDDQY
RLIRRILKAMNLDEKHWAPRQIQWYINGNKDEGLRPQHIETHGDHIQKTMREVYAAYQDA
CDRSGLVDFAELLLRAHELWAKNPEVLAHYQRRFRAVLVDEFQDTNNIQYAWLRMLCSGG
DNNIMIVGDDDQSIYGWRGANVDNIQHFLKDFNKPNTIRLEQNYRSTGNILKAANTVIDN
NTGRLGKELWTEDAQGELISVYAGFNELDEARFIVSKIKDWLNQGNALSDTAILYRNNAQ
SRVLEEALLHEGLAYRIYGGLRFFERQEIKDALGYLRMVSHPHDDAAFERVVNTPSRGIG
EKTLSQVRDAARMHNCSMWQACQLLINEGGFKGRALNAMQSFVLLITELEQTTLDEPLDQ
QADKAIKQSGLYAMYQAERGEKAQARLENLEELVTACKTFIVPEEAEEMTPLAAFLAHAS
LEAGETQADKDQDAVQMMTIHTAKGLEFPLVFLAGVEEGMFPSQMTNDEPGRMEEERRLC
YVGMTRAMQKLYITYAESRRLYGQDKYHTASRFIREMPSDCVEEVRLKSTISRPVHNRFS
QATSHASFEETGFSLGERVVHRKFGEGIVLNYEGSGEHGRVQVNFDEFGSKWLVLAYAKL
EKA
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggatgtatctcgactgctagacgagcttaacgacaaacagcgtgaagcagtagcagcc
ccattgtctaacgctttagtacttgcgggcgcagggagcggaaaaacccgtgtattagtg
caccgtatagcgtggttgatggaagtcgaaaacatcgcgcctttctcaatattggccgtt
accttcaccaataaggcagcaaaggaaatgcgtggccgtattgaatctttgatgggccgc
agcctgcacaatatgtggattggtaccttccacggtcttgcacaccgtttgctgcgtgcg
caccacgctgaagccaacctgcctgagaatttccaaattattgactcagacgatcagtat
cgcttaattcgccgaattttaaaggccatgaatttagacgaaaaacattgggcgcctaga
caaatccagtggtacataaacggcaacaaagatgaaggtttacgccctcagcacattgaa
actcatggcgatcatattcaaaaaaccatgcgagaggtatatgccgcataccaagacgcg
tgtgaccgttcaggcttagttgactttgcggaattgcttttgcgtgctcacgaactgtgg
gcgaaaaaccccgaagtattggcccattatcagcgccgcttccgcgcggtactggttgac
gaattccaagataccaataacattcaatacgcatggcttcgtatgctatgtagtggcggt
gacaacaatattatgattgttggcgacgacgaccagtcaatttacggctggcgtggtgca
aacgtagataatattcagcatttccttaaagattttaataagccaaacaccattcgcctt
gaacagaattatcgctctacgggcaatattcttaaggccgccaacacggttatcgacaac
aacacaggccgtttaggtaaggaactttggactgaagacgcacaaggtgaactcatttct
gtttacgcggggttcaacgagttagacgaagcccgttttatcgtgtcgaaaattaaagat
tggcttaaccaaggcaatgcccttagcgacacggcaattttatatagaaacaatgcccag
tctcgtgttctagaagaagccttacttcatgaaggccttgcttatcgcatttacggcggc
ttgcgcttctttgaacgccaagaaatcaaagacgccctaggctacttacgcatggttagc
catccccacgacgacgcagcctttgagcgcgtggtaaacacacctagtcgaggtattggc
gagaaaaccttatcgcaggtgcgtgacgccgcgcgcatgcataactgttctatgtggcaa
gcctgtcagctacttattaatgaaggcggttttaaaggtcgcgcgctaaacgcaatgcaa
agctttgtattgcttatcactgaactggaacagaccacgttagatgagccactagaccag
caagcagataaagccattaaacaatctggcttatatgccatgtaccaagcagagcgtggc
gagaaagcacaagcgcgattagaaaacttggaagagctggttaccgcctgtaaaaccttt
atcgtgccagaagaggccgaagaaatgacgcctcttgctgcctttttggcacatgcgtct
ttagaagcgggtgagacacaggcagataaggaccaagatgccgttcaaatgatgaccatt
cacacggctaagggcctagaatttccactggtattcttagcaggggttgaagaaggcatg
ttccctagccagatgaccaacgatgagcctggccgaatggaagaagagcgccgactttgc
tatgttggtatgacaagggctatgcaaaaattgtatatcacttacgccgaaagccgccga
ttatacggtcaagacaaataccatacggcgtctcggtttattcgcgaaatgccctctgat
tgcgtggaagaagtaaggctaaaatcgacgatttcccgcccagtgcataatcgctttagt
caggcgacgtcgcatgcaagctttgaagaaaccgggtttagtttaggtgagcgtgtggtt
caccgtaaattcggtgaagggattgttctaaactatgaaggaagtggtgagcacggccgc
gttcaagtaaactttgacgagtttggcagcaaatggctagtacttgcttacgcaaagctg
gagaaagcgtaa
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