Alteromonas macleodii Balearic Sea AD45: AMBAS45_08100
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Entry
AMBAS45_08100 CDS
T02253
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amb
Alteromonas macleodii Balearic Sea AD45
Pathway
amb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMBAS45_08100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amb03400
]
AMBAS45_08100
Enzymes [BR:
amb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMBAS45_08100
DNA repair and recombination proteins [BR:
amb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AMBAS45_08100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
RecG_dom3_C
SecA_DEAD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AFT95095
LinkDB
All DBs
Position
complement(1901285..1904782)
Genome browser
AA seq
1165 aa
AA seq
DB search
MTATLLSLPLPAPKKEASSQDHKHWGQLQGSSAALCISQALSQYKGPIVLITADTPSAMK
LEKEIAFFLSDNTKHTPITLFPDWETLPYDSFSPHQDIVSQRLETLFRFTQQGEGIFIVP
VNTLMQRLAPTDYLAKYLLMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSII
DLFPMGSDQPFRIDLFDDEIDSIRYFDTETQRSGEAVNEIRLLPAREFPTDKEAITLFRQ
QFLEKFDANNASESVFSQVSKGTMPSGVEYYLPLFFEKTATLFDYLHPKSLLLLHGDVQD
ASEFFWADVQERYEQYRYNLARPLLAPDELFLPINELFGAIKQWPRASLSSKVLEEKSGT
SNLQCEKLDDIAINSQKKVPAERLIKTVNQATDNGAKVLFCAETQGRREGLLTVLAKAGI
KPKIVDSFSDFIASHDNIGITVGMVDNSFRWQTQEGELLFITETELLGQKVSQRRLRDKR
TATDESAIIRNLAELSIGQPVVHLDHGVGRYLGLQTLDAGGVATEYLCIEYAKQSKLYVP
VASLHLISRYTGGDADSAPVSALGSDAWTKAKQKAAEKVRDVAAELLDVYARRAAKPGFA
YKINWDDYQAFSDSFPFEETPDQAQAIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAA
FLAANAGKQVAILVPTTLLAQQHYENFKDRFAAWPFEIEVMSRFVSGKAQKSVVERIGEG
KVDIVVGTHKLLSSDIKYKDLGLVIIDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRT
LNMALSGMRDLSIIATAPARRLSIKTFVQQRNKAVIREAIMREILRGGQVYFLHNEVDSI
ARTAEEIAEIVPEARIAVGHGQMRERELEGVMSDFYHQRYNVLVCTTIIETGIDVPSANT
IIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISQLEDLGAG
FALATHDLEIRGAGELLGDDQSGQIASIGFSLYMDMLDKAVNALKEGREPSLDDATSGHT
EVELRIPALLPEDYIADVNTRLSLYKRLASCTSQDDIDEFQVECIDRFGLLPEPAKNLIE
VAEIKLKAQALGILKVDLSAQGGTIEFKETTKVNPGYIISLVQTKPNTFKFEGSQKLRLV
KKTETAKERIAFISDIIADFAKESR
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgacagccactttattatcgcttccattacctgcgcctaaaaaagaagcctcatcacaa
gatcacaaacactggggccaacttcaaggcagcagtgccgcactatgtatcagccaagca
ctcagccaatacaaaggccctattgtactgattaccgccgatactccgtcggcaatgaag
ctcgaaaaagaaatagccttcttcttaagcgataatacaaagcatacacctattactctg
tttccagattgggaaacactgccctacgattcgttttcgccccatcaagacattgtttct
cagcgattagaaaccctattccgctttacacagcaaggcgaaggcatattcatagtgcct
gttaacacgttaatgcagcgtttagcccctaccgattatttagcaaagtatctgcttatg
ctaaacaagggcgacaccttagatagagatcagttcagacgcaatctcgagcaagccggc
tacctgcatgttagtcaggtaatgagccacagcgaattctcggtgcgcggcagcatcatc
gacctttttccgatgggaagcgaccagccatttcgaatagacttgtttgatgacgaaatc
gactccattcgctatttcgatactgaaacccaacgctctggcgaggctgttaacgaaatt
cgcttgctaccagcacgagaatttcctacagacaaagaggcaatcacgcttttccgccag
cagtttttagaaaagttcgacgcaaacaatgcatctgaaagcgtattttctcaggtaagc
aagggcaccatgccgagcggtgtggaatattatcttcccctcttctttgaaaaaaccgct
acgctttttgactatctccaccctaaaagcctgctattacttcacggtgatgtgcaagac
gccagcgagtttttctgggccgacgtacaagaacgctacgagcagtatcgttataactta
gcccgtccactgcttgcaccagacgagctatttttacctataaatgagctatttggtgcc
ataaagcagtggcctcgtgcatctctttccagcaaggtacttgaagaaaaatcaggtact
agcaaccttcaatgcgaaaagcttgatgatattgcgattaactcgcagaaaaaagtacct
gctgaaagactcattaaaacggtaaatcaagccactgacaacggggctaaagtactgttt
tgtgctgaaacccaaggtcgccgagagggcttgcttacggtacttgccaaagcgggcatc
aagccaaagattgttgatagctttagcgattttatcgcaagtcacgacaacattggcatt
accgtgggtatggttgataacagtttccgctggcaaacccaggaaggcgaactgttattt
attaccgaaaccgaactattaggccagaaagtaagtcagcgccgtcttcgcgataaacgc
accgccaccgacgaaagcgccattatccgtaatcttgccgaactttctattggtcagcct
gtggtgcacctcgatcacggtgttggccgctatttgggtcttcaaacgttggacgcgggc
ggcgtagcaaccgaatatttgtgcatcgagtatgctaagcaatctaagctttacgtgcct
gtggcctcgcttcacttaatttcacgctacaccggtggcgatgccgacagcgcgccagta
agcgctctaggttctgacgcatggacaaaagccaagcaaaaagccgccgaaaaagttcgt
gacgtggccgctgagcttttagatgtatatgcccgccgtgcagccaagccaggttttgcc
tacaaaataaattgggatgactaccaagcgttctcagacagcttcccctttgaagaaaca
cccgaccaagcccaagccattgctgcggttatgcacgacatgggcagtccatcggctatg
gatcgcctcgtttgcggtgacgtaggtttcggtaaaaccgaagttgccatgcgcgcggca
ttccttgcagctaatgctggtaaacaggtggctattttggtgcccactaccctactggct
cagcaacattacgagaactttaaagaccgctttgctgcgtggccgtttgaaattgaagtg
atgagccgctttgtaagcggtaaagcgcaaaaatctgtggttgagcggatcggcgaaggc
aaagtagatatcgtagtaggcacacataaactgctgtctagcgatattaaatataaagac
ttaggccttgtgatcatcgacgaagaacatcgctttggcgtgcgtcaaaaagagaaactt
aagtcattacgtgccgatgttgatatccttaccctaacggcaacgcctattcctcgtacg
cttaacatggcgttatcaggcatgcgcgacttatcgattattgccacagcccctgcccgt
cgcttatcaattaaaacctttgtgcagcagcgtaacaaagccgttattcgcgaagccatt
atgcgtgaaattttgcgtggtggtcaggtttacttccttcacaatgaagtggatagcatt
gcacgaacagccgaagaaattgccgaaattgtacccgaagcccgtattgcagtgggccac
ggtcaaatgcgcgagcgcgagctagaaggcgtaatgagcgacttctaccaccagcgttac
aacgttctagtttgtaccactattattgaaacgggtatcgatgtcccgagtgcaaacacc
attattatggatagagccgaccatctaggtttagcgcagctgcaccagcttcgtggtcgt
gtgggtcgctcgcatcatcaagcgtacgcctacttattaacgcctcatccaaagcgcatg
accaaagatgcagtaaaacgtttagaagcaatatcgcagcttgaggatttaggtgcaggt
tttgcgcttgctacccacgatttagaaattcgtggtgccggtgagctgttaggcgacgat
caatcggggcaaatagcgagtattggtttcagtttgtatatggatatgctcgataaagcc
gttaacgcgcttaaagaaggccgagagccttcattagacgacgcgacctcgggccatacc
gaagttgaactgcgcattccagccctactgcctgaagactatattgccgacgttaacact
cgcctatcgctatataaacgtctggcaagctgtacgtcccaagacgacattgatgaattc
caggtagaatgtattgaccgctttggtctattgccagagccagctaaaaacttgatagaa
gtggctgaaattaaactaaaagcccaggcgttaggcattctaaaagtagacttgtcggcc
caaggcggtaccatagagtttaaagaaaccactaaggttaacccaggctatattattagt
ttggtgcaaaccaaaccaaacacctttaagtttgaaggaagccaaaaactgcgtttggtg
aaaaagaccgaaacagctaaagagcgcatcgcgtttattagcgatattattgccgatttt
gcaaaggagtcgcggtaa
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