Actinosynnema mirum: Amir_0851
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Entry
Amir_0851 CDS
T00957
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ami
Actinosynnema mirum
Pathway
ami03420
Nucleotide excision repair
ami03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Amir_0851
03430 Mismatch repair
Amir_0851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ami03400
]
Amir_0851
Enzymes [BR:
ami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Amir_0851
DNA repair and recombination proteins [BR:
ami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Amir_0851
MMR (mismatch excision repair)
Other MMR factors
Amir_0851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACU34812
UniProt:
C6WM78
LinkDB
All DBs
Position
complement(933357..937406)
Genome browser
AA seq
1349 aa
AA seq
DB search
MPHVVAAGGVQRGGAVPHASPADIADALGLHPPTPEQAAVIASPAAPALVVAGAGAGKTE
TMAARVVYLVANGVVTPDRVLGLTFTRKAARQLGERVRGRLRRLAGSPLLDELDPSGRRR
AAVLTTEPVVLTYHAYAGRLVGEHGLRLPVEPGVRLLTETAAWQLAHRVVSAWTQDLDTD
KIPTTITSYLLSLAGELGEHLVEPEQLLAHAEHLCALIEHAPKAPRQKDALPEKLQEIVD
AQRLRVALLPLLDAYRARKRRDAVLDFADQMSLAARLATGHPEVVEGERERYGAVLLDEY
QDTGHAQRVLLRALFGDGDPMPVTSVGDPAQAIYGWRGASAANLPRFREDFPPADKYELL
TSFRNPPEVLHLANAVSGPLRAAGLDVAPLRHREGVEPGDVRIGLFPDVRAELEWLADTV
AEQWRAHVDTSDEPPTAAVLVRRRSDMPAIAAVLRDRGLPVEVVGLGGLLDEPEVRDLTS
ALRVLVDPLAGTAATRLLTGSRWRIAAFDLAAMWQRARDLAGAPARKSPDEDPLSVLADA
LPGEHSEQAGLADALDDPGDPSAYSAEGYRRIRRLGAELAALRRRLTQPLPELVADVERT
LLLDIEAVARPGGVGRAHLDAFADVVSDFAAASPAATLPALLDYLRTAEHAEDGLAPGEV
EVVDNRVQLVTMHSAKGLEWRIVAVPHVVKDVFPGRRKSASWLKSVTELPAALRGDAQDL
PELRVPGGANRKEVEEALDRHADEFEERRLVEERRLLYVALTRSEHSLLVSGHWWGETGA
TPKGPSAFLTELREVVTTAEHPPADVAHWAPAPGPEDENPLAAKAKTAQWPADPLGSRRD
AVSAGAAMVVAALDRLREAAEHEPPGEPDEPDEPAVTAAEAGTADAGEEWVPPDDEWLPS
DEEEPPPPPEGPDGDWAEWTTPDEPWDDGTPPDASEAAATAPEHGPEVELRSSAPAADPT
SESGPEAGLESESEPEPEPEPEPEQGSAPTHGSEPGTGPETVIDSESAPHPGAGAVSAAR
LSAGGGVSATLPDTDTDTDTAIDAALAATPLGFAPEGDSVSPEGADLPEGSPAADPIPAA
PVVPAADLVPADPVPAEPVLPTDPEIVLPTDPEISDPDAADPEGWARDVDVLLAERAAAM
DRRERVLLPEHLSVSQLVELATDPDQLARRLRRPLPFPPNPLARRGTAFHTWLERRFGAV
RLLELDELPGAADEDAVPDGELGRLQEAFLASAWADRTPHAVEVPFEAEVDGLAVRGRMD
AVFADPDGGWTVVDWKTGRVPEADRVPSLSVQLAAYRLAWASLSGSPVELVRAAFHYVRD
DRTLRPADLLDAEGLRALIRTVPDLRPKE
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgccccacgtggttgcggcgggtggtgtccagcggggtggtgcggttccgcacgcgtcg
cccgccgacatcgccgacgccctcgggctgcacccgccgacgcccgagcaggccgccgtc
atcgcctcgcccgccgcccccgcgctggtcgtggcgggcgcgggcgcgggcaagaccgag
accatggccgcgcgcgtcgtctacctggtcgcgaacggcgtcgtcacgcccgaccgggtc
ctcggcctcacgttcacccgcaaggccgcccggcagctcggcgagcgggtgcgcggtcgg
ctgcgccgcctggccgggtcgccgctgctggacgagctggacccgtccggccgccgccgc
gccgccgtgctcaccaccgagccggtcgtgctcacctaccacgcctacgcgggccgcctg
gtcggcgagcacgggctgcggctgcccgtggagcccggcgtgcggctgctcaccgagacc
gcggcgtggcagctcgcgcaccgcgtggtgtcggcgtggacccaggacctcgacaccgac
aagatccccaccacgatcacctcctacctgctctccctcgccggcgagctgggcgagcac
ctggtcgagcccgagcagctcctcgcgcacgccgagcacctgtgcgcgctgatcgagcac
gcccccaaggcccccaggcagaaggacgccctgccggagaagctccaggagatcgtggac
gcccagcgcctgcgcgtcgccctgctgccgctgctcgacgcctaccgggcccgcaagcgc
cgcgacgccgtcctggacttcgccgaccagatgagcctcgccgcccgcctggccaccggg
cacccggaggtcgtcgagggcgagcgcgagcgctacggcgccgtgctgctcgacgagtac
caggacaccggccacgcccagcgcgtgctgctgcgcgccctgttcggcgacggggacccg
atgccggtcacctcggtcggcgaccccgcccaggccatctacggctggcgcggcgcgagc
gcggccaacctgccccggttccgcgaggacttcccgcccgccgacaagtacgagctgctc
accagcttccgcaacccgcccgaggtgctgcacctggcgaacgccgtgtccggtccgctg
cgcgcggcgggcctggacgtcgcgccgctgcggcaccgcgagggcgtcgagccgggcgac
gtgcggatcggcctgttccccgacgtgcgcgccgagctggagtggctggcggacaccgtc
gccgagcagtggcgcgcccacgtggacaccagcgacgagccgccgaccgcggccgtgctg
gtgcgccgccgctccgacatgcccgcgatcgccgccgtgctgcgcgaccgggggctgccg
gtggaggtcgtcggcctcggcgggctgctggacgagccggaggtgcgcgacctgaccagc
gccctgcgcgtcctggtcgacccgctcgcgggcaccgccgccacccggctgctcaccggt
tcccgctggcggatcgccgccttcgacctggccgcgatgtggcagcgcgcccgcgacctg
gcgggggcgcccgcgcgcaagtcccccgacgaggacccgctgtccgtgctggccgacgcg
ctgcccggcgagcactccgagcaggccgggctcgcggacgcgctcgacgaccccggcgac
ccgtccgcctactcggccgagggctaccggcgcatccggcggctgggcgcggagctggcc
gcgctgcgcaggcggttgacccagccgctgccggagctggtcgccgacgtcgagcggacc
ctgctgctggacatcgaggcggtcgcccggccgggcggggtggggcgggcgcacctggac
gcgttcgcggacgtggtgtcggacttcgcggcggccagcccggcggcgaccctgcccgcg
ctgctggactacctgcgcaccgccgagcacgccgaggacggcctggcgcccggcgaggtc
gaggtggtggacaaccgggtgcagctggtgacgatgcactcggccaagggcctggagtgg
cggatcgtcgccgtgccgcacgtggtgaaggacgtcttccccggacggcggaagtcggcg
tcgtggctgaagtcggtgaccgagctgcccgccgcgctgcgcggcgacgcccaggacctg
ccggagctgcgggtgccgggcggggcgaaccgcaaggaggtcgaggaggcgctcgaccgg
cacgcggacgagttcgaggagcggcggctggtcgaggagcggcggctgctgtacgtggcg
ctgaccaggtccgagcacagcctgctggtgtcgggccactggtggggcgagacgggcgcg
accccgaagggcccgtcggcgttcctgaccgagctgcgcgaggtcgtgacgaccgccgag
cacccgcccgccgacgtggcccactgggcgcccgcgccggggccggaggacgagaacccc
ctcgcggcgaaggcgaagacggcccagtggcccgccgacccgctgggctcgcgccgcgac
gcggtgtccgcgggggcggccatggtcgtcgccgcgctggaccggctgcgcgaggccgcg
gagcacgaaccgcccggcgagcccgacgagcccgacgagcccgccgtgaccgccgccgag
gccgggacggccgacgcgggcgaggagtgggtgcccccggacgacgagtggctgccctcg
gacgaggaggagcccccaccaccaccggagggaccggacggcgactgggcggagtggacg
acccccgacgagccctgggacgacggcacgcccccggacgcctcggaggcggcggcaacc
gcccccgagcacgggcccgaggtcgaactccggtcaagcgcacccgccgccgatcccaca
tccgagtccgggcctgaagccggactcgaatccgaatccgagcccgagcccgagcccgag
cccgagcccgagcaaggatcggcgcccacgcacgggtccgagccggggaccggccctgag
accgtgatcgactccgagtccgcgccccatccgggcgccggggcggtgtcggccgcccgg
ctgagcgcgggcggcggggtctccgccacgctgcccgacaccgacaccgacaccgacacc
gccatcgacgccgccctcgccgctacccctctggggttcgctcccgagggtgattcggtg
tcccccgaaggggcggatctccccgaggggtcccccgccgccgatcccatccccgccgca
cccgtcgttcccgccgccgacctcgtccccgccgaccccgtccccgccgaacccgtcctc
cccaccgaccccgagatcgtcctccccaccgatcccgagatcagcgaccccgacgccgcc
gatcccgagggctgggcgcgggacgtcgacgtgctgctcgccgagcgggccgccgccatg
gaccgccgcgagcgcgtcctgctgcccgagcacctgtcggtcagccagctcgtcgagctg
gccaccgaccccgaccagctggcccgccgcctgcgccgcccgctgccgttcccgccgaac
ccgctggcccgtcgtggcaccgcgttccacacctggctggagcggcggttcggggcggtt
cggctgctggagctggacgagctgcccggcgccgccgacgaggacgccgtgccggacggg
gagctggggcggctgcaggaggcgttcctcgccagcgcctgggccgaccgcacgccgcac
gccgtcgaggtgcccttcgaggccgaggtggacgggctcgcggtgcgcgggcggatggac
gccgtgttcgccgacccggacggcgggtggaccgtcgtggactggaagaccggccgggtg
cccgaggccgaccgggttccgtcgctgtccgtgcagctcgcggcgtaccggctggcctgg
gcgtcgctgtcgggcagcccggtggagctggtcagggccgccttccactacgtccgcgac
gaccgcacgctccgccccgccgacctgctcgacgccgagggtctgcgcgccctcatccgg
acggtgcccgatctccgcccgaaggagtga
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