Alligator mississippiensis (American alligator): 102561105
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Entry
102561105 CDS
T03087
Symbol
NCAN
Name
(RefSeq) neurocan
KO
K06794
neurocan core protein
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
amj00535
]
102561105 (NCAN)
00536 Glycosaminoglycan binding proteins [BR:
amj00536
]
102561105 (NCAN)
04091 Lectins [BR:
amj04091
]
102561105 (NCAN)
Proteoglycans [BR:
amj00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
102561105 (NCAN)
Glycosaminoglycan binding proteins [BR:
amj00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
102561105 (NCAN)
Lectins [BR:
amj04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
102561105 (NCAN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Xlink
Lectin_C
EGF
Sushi
hEGF
V-set
Ig_3
EGF_2
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
102561105
NCBI-ProteinID:
XP_019354524
LinkDB
All DBs
Position
Un
AA seq
1381 aa
AA seq
DB search
MRARPPPPAERGGCAGREHPRLRLRLRAGSQDNGQAIRIHKVQHQAVRVGLAEPVALPCL
FLLHASAMRGPNDPPDPPRIKWSKVQSASGQRQDEPILVAKDNAVKVAKAYEGRVSLPGY
PRDRYNATLVLGAARASDAGLYRCEVVAGIDDEQDLLPLEVTGVVFHYRAASNRYALTFV
EARRACRDSSALIASPAHLQAAFEDGYDNCDAGWLSDQSVRYPITHSRPGCYGDRNSLPG
VRSYGQREADEAYDVYCYARELQGKVFYVSTPGRLTAQGAREQCQSHGAVLATTGQLHLA
WQSGLDQCDPGWLADGSVRYPISIPRKKCGGDEPGVRTVYQFPNRTGFPDPASKFDAYCY
RAHQQPPPGLEKQDAPVQERPESRAALEGQSSPRAPDLLGMDNLLVEHEEELPSPGHNEL
FPREREDLSTSGDSREVPRDHFGLLHRLVGPALPEDEQLQPVPASPAGGHPAPPDTGPEW
TAGPRVLAEDSTALAPVTASPAAGPGEDELLNMVDQGPLQGTPAGTWEGVPSTSQLLPVQ
ADLTGLEEPSDAIKMPVFPSHHPAMKVPLGPATSAPSASPTTPSAGAQHRPGTSAADGPE
LAGPGASEEPRPVPSTPQPTRKSIYSGLNGRYFQLQHGQGGQGTERGSTEPPFLAQEARG
VAANAVEMLTMPGITVEPDAGEGAYPFSNEVEGVAGYQPPGPEHRGPPPTPSPPAPRDQP
APGSESPEVEQAAPTAGPDGGGLAGPEGAAPSTLARLTPPVRPPGPATSGAPLAGAADAP
AGARARGDHPQLGEEPEELSGEPPSSEEGGRVPLGPGSAISASPPPGGSDGSGAAELSFQ
AVTFTESLGVPANAESSGAPEPWEGAGREGAPPGEAGEPGLGSAAAGGDPWGQEQEDSAE
EGQAAPPGRTPGPQEEDRPSPTTARWAPGQLPAASRPAEPQPDAALALTRPDEVPPWAAG
RDPGPPEPRGTAQPVTGSEQDAGAAGATPEPARTHPPAAGPAGATPXXXXAAPGPEPPAL
PSAGLDGAGARTESPDGGSGEDPALPFLGEAEIGAWLGDGNDSVLAPADPCENNPCLHGG
TCQSNGSVSSCTCDPGFTGENCEIDIDDCLSSPCQNGGTCIDEINSFVCLCLPSYGGSLC
EKDTEGCDHNWHKFQGHCYRYFAHRRSWEDAERDCRRRAGHLTSIHSQEEHGFINSFGHE
NTWIGLNDRIVERDFQWTDNTGLQYENWRENQPDNFFAGGEDCVVLVSHEIGKWNDVPCN
YNLPYICKKGTVLCGPPPEVDNAFPVGRRKEKYSIHATVRYQCADGFMPRHVPTVKCHSN
GKWDRPKLLCTRPRRSHRTRRHHRRHRSHPHRPHRRHQPRKERRKHRRPHPPAWLDEGRG
F
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcgcggccccctcccccggcagagcgcggtggctgcgccgggcgggagcatccg
cggctccggctccggctgcgggcaggctcccaggacaatgggcaggccatccggatccac
aaggtgcagcaccaggcggtgcgggtggggctggctgagcccgtggccctgccctgcctc
ttcctgctccacgcctcggccatgcgggggcccaacgacccgccggacccgccgcgcatc
aagtggagcaaggtgcagtcggcgtccggccagcggcaggacgagcccatcctggtggcc
aaggataacgccgtgaaggtggccaaggcctacgagggccgggtgtccctgcccgggtac
ccccgcgaccgctacaacgccaccctggtgctgggtgccgcccgtgccagcgacgcgggg
ctgtaccgctgcgaggtggtggccgggatcgacgacgagcaggacctgctgcccctggag
gtgacaggtgtcgtgttccactaccgggccgccagcaaccgctacgcactgacctttgtg
gaggcgcggcgtgcctgccgggacagctcggccctcatcgcctcacccgcacacctgcag
gcagccttcgaggacggctacgacaactgcgatgccggctggctgtcagaccagagcgtc
aggtaccccatcacgcactccagacctggctgctacggagaccgcaacagcctcccgggc
gtccgcagctacgggcagagggaagccgatgaagcttacgatgtctactgctatgccagg
gagctccaagggaaagtgttttacgtctccacgcctgggcggctcaccgcccagggggcc
cgggagcagtgccagagtcacggggccgtgctggccaccacgggccagctgcacctggcg
tggcagagtgggctggaccagtgcgacccgggctggctggccgatggcagcgtccgctac
cccatcagcatcccacgcaagaagtgcggcggggacgagccaggggtgcggaccgtgtac
cagttccccaaccgcaccggcttccctgacccggcctccaagttcgatgcctactgctac
agagcacaccagcagccgcccccggggctggagaagcaggatgcgccagtgcaggagaga
ccggagagcagggcagccttggaggggcagagcagccccagggcacccgacctgctgggc
atggacaaccttctggtggagcacgaggaggagctgccctccccgggccacaacgagctg
ttcccgcgggagcgagaggacctcagcacgtccggagactcccgggaggtgccccgggat
cacttcggcctcctgcacaggctggtggggccggccctgcccgaggatgagcagctgcag
cccgtgcctgccagcccagccggggggcacccagcaccccctgacacaggccccgagtgg
acagcagggcccagggtgctggcagaggacagcacggcgctggctcccgtcacggcctcc
cctgcagctgggccgggtgaggacgagttgctgaacatggtggaccaggggcctctgcag
ggcaccccggccggcacctgggagggggtgcccagcaccagccagctgctgcccgtgcaa
gcagatctcacaggcctggaggagcccagtgatgccatcaagatgcctgtcttcccttcc
catcaccctgccatgaaggtcccgctggggcctgccaccagcgccccatcagcctccccc
acaacgccttctgccggggcccagcaccgcccggggacctctgctgccgacgggccagag
ctggccggcccaggcgcctccgaggagccccggcccgtgcccagcaccccccagcccacc
aggaagagcatctactcggggctgaacggccgctacttccagctgcagcacgggcaaggg
ggccaaggcacggagcggggcagcacggagccccccttcctggcgcaggaggcaagaggc
gtcgcggccaacgcagtggagatgctgaccatgccggggatcactgtggagcctgatgct
ggggagggggcctaccccttctccaacgaagtggagggggtggccggctaccagccgccg
ggaccggagcaccgcggccccccgcccaccccgtcgccccccgccccgagagaccagccg
gccccgggcagcgagagccccgaggtggagcaagcggccccgacggccggccccgacggt
ggggggctggctggcccggagggagcagcgcccagcaccctggctcgcctgacgccgcct
gtgcgcccacccggtcccgccacctccggagcccccctggccggggcggcagacgctccc
gccggcgccagggcccgcggggatcacccgcagctgggggaggagccggaggagctctcc
ggggagccgccgtccagcgaggagggcggccgtgtccccctcggccccggctccgcgatc
tcggcgtcgcctccgcccgggggcagcgacggcagcggcgccgcggagctcagcttccag
gccgtgaccttcaccgagagcctgggggtcccggccaacgcggagagctccggcgccccg
gagccctgggagggggccggcagggaaggagccccgccgggagaggcaggggagcccggc
ctgggcagcgcggctgcaggaggggacccctggggccaggagcaggaggacagcgcagag
gagggacaggcggcgccgcccgggaggacccccggtccccaggaggaggatcgcccatcc
ccgaccactgcccgctgggccccggggcagctcccggccgccagccgccccgctgagccg
cagcccgacgccgccctggcgctgacacggcccgacgaggtaccgccctgggccgccggc
cgggatccaggcccccccgagccacgggggaccgcgcagccggtgaccgggagcgagcag
gacgcaggagccgccggggccaccccggagcccgcccgcacccacccgcccgcagcgggc
ccggcgggggccacccccnnnnnnnnnncggcggctcccggcccggagccccctgcgctg
ccctcggctgggctggacggggccggggccaggaccgagagcccggacggcggcagcggc
gaggacccggcgctgcccttcctcggggaggcggagatcggggcctggctgggcgacggc
aacgacagcgtgctggcccccgccgacccctgcgagaacaacccctgcctgcacggcggc
acctgccagtccaacggcagcgtctccagctgcacctgcgacccgggcttcaccggggag
aactgcgagatcgacatcgacgactgcctgtccagcccctgccagaacggaggcacctgc
atcgacgagatcaactccttcgtctgcctctgcctgcccagctacgggggcagcctctgc
gagaaagacacggagggctgcgaccacaactggcacaagttccagggccactgctaccgc
tacttcgcgcaccggcgctcctgggaggacgcggagcgtgactgccgccgccgcgccggg
cacctcaccagcatccactcgcaggaggagcacggcttcatcaacagcttcgggcacgag
aacacctggattgggctcaacgaccgcatcgtggagcgggatttccagtggaccgacaac
actggcctgcaatacgagaactggcgcgagaaccagcccgacaacttcttcgcgggcggc
gaggactgcgtggtgctggtgtcgcacgagattggcaagtggaacgacgtgccctgcaac
tacaacctgccctacatctgcaagaagggcacagtgctgtgcgggccgccgcccgaggtg
gacaacgccttccccgtgggcaggaggaaggagaagtacagcatccacgccacggtgcgg
taccagtgcgccgacggcttcatgccccgccacgtccccaccgtcaagtgccacagcaac
gggaagtgggaccggcccaagctcctctgcacaagacccagaaggtcacaccgaacccgg
cgccaccaccgccgccaccgcagccacccacaccgcccgcaccgccgccaccagccccgc
aaggagcggcgaaaacaccgccggccgcacccgcccgcctggctggacgagggccgcggc
ttctag
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