Alligator mississippiensis (American alligator): 102562099
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Entry
102562099 CDS
T03087
Symbol
SHANK1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
amj
Alligator mississippiensis (American alligator)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
Ank_4
Ank
SAM_1
Ank_5
SAM_2
SH3_2
SH3_1
PDZ_6
PDZ
SH3_9
FERM_f0
Motif
Other DBs
NCBI-GeneID:
102562099
NCBI-ProteinID:
XP_019344429
LinkDB
All DBs
Position
Un
AA seq
1843 aa
AA seq
DB search
MPQSPVSSEEEERVSDYPEGESDSESSRDGSPGANPGHPAHRTLGRPLPVPDDAHFSMMV
FRIGIPDLHQTKCLRFNPDAAIWVAKQQILCTLNESLKDVLNYGLFQPATNGRDAKFLDE
ERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGLKKFLEYVQHGSVEK
VARLLDKGLDPNYHDSDSGETPLTLASQLDGTVEIIRLLCLGGAHIDFRARDGATALHRA
VCTRRYAALMALLDLGGSPNYKDRRGLTPLYHTAMVGGDPRCCELLLYNRAHIGTVDENG
WQEIHQACQHGHSQHLEHLLFYGAEPAAQNASGNTALHICALYNKESCARILLYRGANKE
IKNNSGQTPFQVAVIAGNFELGELIKSHRDSDVVPFQETPQYASRRRDGGRSLAVPHILL
RANSDTSMNVPDWMLYGPGGSPAPPTVAVQTPKITGTLRSASSPRGARTRSPSRGRHPED
AKRQQRGRPSSSGFSKDTGPGGTLNSRGVKRKLYSAVPGRTFMAVKPYQAQAEGELSLSK
GEKIKVLSVGEGGFWEGQVKGRIGWFPSDCVEEVPNKSQEGKSESRSDKAKRLFRHYTVG
SYDSFDAPSDYIIKEKTVLLQKKDNEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVD
EGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNNLMVKVVMVTRNPEMEEAM
RKKAAPQQTKRLPPPAISLRSKSMTSELEEMVEKVSPWKKRNEYEPTLATEKKRTVYQMA
LNKLDEILAAAQQTISVGEGSGSGGLPSLGKARGAKGYFTPEPNFEPHRMGPPGYDRPSY
LPPGTPQGIVLRQKSIGAAEDEKPYLTPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYST
PPSATGRLTPSVRSTFNPSAEAKLYPGSLHPEPPTFDSQARRDRLSLFRQESEQVGEGLR
GWRGHHTPSELRYYNLPARSASTAMYVPAKPLRRKGPLVKQTKVEDEHRQQGTASQSQPP
GPVPPPGPLATPPAPEKSSIAIPTIVIKAPSTSSSGRSSQGSSMEAEGQPEPAPVPALPL
HNSMDFTSQFGAALVGAARRDREWHSEARRRSALFLSTETPEDEVPEPAPAPRLRHSKSI
DEGMFSAEPYLQLSYGQPLPPGTYYQPRATKAYGGSPSTTSAFTTVCSSFLPQLQARPGG
GPSQPLVHPLTGKILDPSSPLGLALVARERALQESQSQQQQQQHQGRTEAEERRSRPASP
RFSEAVPESPRDSGSVLRLWGTPVGEQGKVEPESPRCGPVAGEAKGGAATWAEKRVAEDG
GEKLELHVRFVENCQPPEDGEGPGQSPPGHAEENGLPLLVLPPPAPSIDVDDEFLFTEPL
PPPLEFSNSFEKPDSPKTGGEAPLLPTAPEPSPAVAPVAPPPPPPATTTALDSTTSSLTS
YDSEVATLTQGGAPEAREPPHVNFSSVVSSIQIPAPEAPEAVTDSGIEEIDSRSSSDHHL
ETISSVSTLSSMSGLSSEGAELLDTYITYLDGQAFGGAAEKGPLPGKLRSRPFPARRDPT
TPTSSTISVAACAENVFALTPAPVKEVPAPQRRSPTLPWEETTSTAKTSPVSAMKASIIS
ELSSKLQQMSGVSWARPPDGAGSFSTERPSSLQRPRLPEDQSAPLVPSKPSSSLFHNWPK
AGPGSKAPKSVEFDIRPALRRAPSPATLPTEHKISPAPRPSSLPILPSVPLYGGVFDLRG
SPTSGHPFPDFPSGSRSLSPTHFLPPPTDKPFGAKPLPFWTKFDVADWLDYLNLGEHRDR
FLDNEIDGSHLPSLTKEDYIDLGVTRVGHRMNIDRALKFFLER
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atgccccagagccccgtgtccagcgaggaggaggagagggtctcggactatcctgagggg
gagtcggactccgagagctcccgggacggctcccctggtgctaaccccggccaccctgcc
cacaggaccctggggcgccccctgccggtgccggacgacgcccacttcagtatgatggtc
tttcggattggcattcctgacctgcaccagacgaaatgtttgcgcttcaacccggatgca
gccatttgggtggcaaagcagcagatcctgtgcaccctcaatgagagcctcaaggatgtg
ctgaactatgggctcttccagccggccaccaatgggcgtgatgccaagttcctggacgag
gagcgcctactgcgcgagtacccccaaagctttgagaagggtgtaccctacctggagttc
cggtacaagacccgggtttacaaacagaccaacctggatgagaagcagctggcaaaactg
cacaccaagaccggcctgaagaagttcctggagtacgtgcagcacggctcagtggagaag
gtggcgcgactgttggacaagggcctggatcccaactaccacgactcagacagtggggag
accccgctgaccttggcctcacagctggatggcacggtcgagatcatccggcttctgtgc
ctcgggggagcccacatcgacttccgggcacgggatggtgctactgcactgcacagagct
gtgtgcacccggcgctatgcggccctcatggcactgctggacctcgggggctcccccaat
tacaaggaccgccgtggcctgacccccctgtaccacacggccatggtggggggcgaccca
cggtgctgtgagctccttctttacaaccgggcgcacatcggcaccgtggacgagaacggg
tggcaggagattcatcaggcttgccagcatgggcactcccagcacctggagcacctcctg
ttctatggggctgagccagctgcccagaacgcatcagggaacactgccctgcatatctgc
gccctgtacaacaaggagagctgtgcccgcatcctcctgtaccgtggggccaacaaggaa
atcaagaacaacagtggacagacaccctttcaggtggctgtaattgctgggaactttgag
ctgggggagctgatcaagagccatcgagattcagatgtggtcccgttccaggagaccccg
cagtacgccagccggcgccgggatgggggccgcagcctggcagtgccccatatcctgctc
cgggccaacagtgacaccagcatgaacgtgcccgactggatgctgtatgggcctgggggc
tcacccgccccccccactgtagcggtgcagacccctaagatcaccgggaccctgcgcagt
gccagctccccccgcggtgcccgcacccgctccccctcccgtgggcggcaccctgaggat
gccaagagacagcagcgggggcgccccagctccagcggcttttccaaggacacggggcca
ggggggacgctgaacagccggggggtgaagcggaaactgtactcggctgtgcccgggcgc
accttcatggccgtgaagccctaccaggcgcaggctgagggcgaactgtctctcagcaag
ggcgagaagatcaaggtgctgagcgtgggcgaaggcgggttctgggaggggcaagtgaag
ggccgcatcggctggttcccctcggactgcgtggaggaggtgcccaacaagtcccaggag
ggcaagtcagagagccgcagcgacaaggcgaagcgtctcttcaggcactacacagtggga
tcctatgacagctttgatgcccccagcgactacatcatcaaggagaagacagttttgctg
cagaagaaggataacgagggctttggcttcgtgctgcgtggtgccaaggcgcagaccccc
attgaggagttcacacccaccccggccttccctgccctgcagtacctggagtcagtggat
gagggtggcgtggcctggcgtgccgggctccgcatgggggatttcctcattgaggtcaat
gggcagaatgtggtgaaagtcgggcaccgccaggtggtgaacatgattcgccaggggggc
aacaacctgatggtgaaggttgtcatggtaaccaggaaccctgagatggaggaggccatg
aggaagaaagcggccccacagcagacgaaacgcctgcctcccccagccatctcgctgcgg
tccaaatccatgacctctgagctggaggagatggtagaaaaggtctccccctggaagaag
aggaatgagtatgagccaaccctggccactgagaagaagaggacagtctatcagatggca
ctgaacaaactggatgagatcctggccgcagctcagcagaccatcagcgtgggcgagggg
tctgggtctggggggctcccctcccttgggaaggcccggggagctaagggctacttcacc
cctgagccaaacttcgagcctcaccgaatgggcccacctggctatgatcgcccatcatac
ctgccccctggcaccccccagggcatcgtgctgcgccagaaatccattggggcagccgag
gacgagaagccctacttaacgccaccggccatgaagttcagccgcagcctatcggtgccg
ggttcagaggacatcccgcccccacccaccacatccccacccgagcccccgtacagtacc
ccaccctctgccacgggccgcctcacgccttctgtgcgctccaccttcaaccccagtgcc
gaggccaagctgtacccaggctccctgcaccctgagccacctacctttgacagccaggcc
cggcgggatcgcctctccctctttcgccaggaatcggagcaggtgggtgaggggctgcgg
ggctggcgtgggcaccatacaccctctgagctgcgctactacaacctgccggcccgatct
gccagcaccgccatgtatgtgccagccaagcctctacgccgcaagggtcccctggtcaag
caaacgaaggtggaggatgaacaccgccagcagggcactgcctcccagagccagccacca
gggccggtcccaccaccaggccccttggccaccccacctgccccggagaagagctccatc
gccatccccaccattgtcatcaaggcaccctccaccagcagcagtgggcgcagcagccag
ggcagcagcatggaggccgaggggcagcccgagccagcacctgtgcccgccttgcccctg
cacaacagcatggacttcaccagccagtttggggcagcactggtgggtgcagcccggcgg
gaccgtgagtggcacagtgaagcccggcgccgctctgccctctttctctccactgagacc
cccgaggatgaggtgcctgagccagcacctgctcctcgcctccgccactccaagagcatt
gatgagggcatgttttcagctgagccctacctgcagctcagctatggccagcccctgccg
ccaggcacctactaccagccccgggccaccaaggcttatggcggtagccccagcaccact
agcgccttcactaccgtctgctccagcttcctgcctcagctgcaagcccggccagggggg
ggcccctcacagcccctggtccatcccttgacaggaaagatcctggatcccagctcaccc
ttggggctagcattggtggcacgggagcgggcgctgcaggagtcccagtcccagcagcag
cagcaacagcatcaggggcggacagaggctgaggagcggaggtctcgccccgcctctcca
cggttcagtgaggcggtgcctgaatctccccgagacagtggttctgtgctgcgcctctgg
gggacgccagtgggtgagcagggcaaggtggaacccgagagcccgcggtgtggccctgtg
gcaggtgaggccaagggtggggcagccacatgggctgagaagcgggtggcagaggacggt
ggggagaagctagagcttcacgtccgctttgtagagaactgccagccgccagaagatggt
gaggggccaggccagagccccccaggccacgctgaagagaacgggctgcccctacttgtt
ctgcccccgcccgccccctccattgacgtggacgacgagttcctgtttactgagccgctg
ccaccacccctggagttctccaacagctttgagaagcccgattcacccaagacgggtggt
gaggccccactgctgcccacggccccggagccgtcgccggccgtcgccccggtggcaccg
ccaccaccgccgccagctactacaacagcgctggactccaccacgtccagcctgacatcc
tatgacagtgaggtagccacactgacccagggtggggcccctgaggctcgcgagccccct
cacgtcaacttctcctcggtggtgtcatccatccagatcccagcgcctgaggcccctgaa
gctgtgaccgattcaggaattgaggagattgacagccgcagcagcagcgaccatcacctg
gagaccatcagttccgtctccactctgtccagtatgtcaggcctatccagcgagggggct
gagttgctggacacctacatcacctacctggatgggcaggcctttgggggtgctgctgag
aagggccccctgcctggcaagttgcggtcccgccccttccctgcccgccgtgaccccact
acgcccaccagctccaccatctcagtggcggcctgcgccgagaatgtctttgccctcacg
ccagcacccgtcaaggaggtgcctgctccccagcgccgctcgcccaccctgccctgggag
gagaccacctccactgccaagacctcccccgtgtcagctatgaaggccagcatcatcagc
gagctcagctccaagctgcagcagatgagtggggtgtcctgggcccgcccccctgatggc
gcgggctccttcagcactgagcggcctagctccctgcagaggccaaggctccctgaggac
cagtcagccccgttggtgccctccaagccgtccagcagcctcttccacaactggcccaag
gcgggaccgggcagcaaggcacccaagagtgtggagttcgacatccgaccggcgctgcgg
cgtgcacccagccccgccacgctgcccacggagcacaagatcagcccggcacctcggccc
tcctccctgcccatcttgccctcggtgccgctctatgggggggtcttcgacctgcgcggc
tcccccacctctgggcatcccttccctgacttcccctcaggcagccgctccctctcgccc
acccacttcctgcccccgcccacggacaagcccttcggcgccaagcccctgcccttctgg
accaaattcgacgtggctgactggttggactatctcaacctcggggagcaccgcgaccgc
ttcctggacaacgagattgatgggtcccatctgccgtccctcaccaaggaggattacatc
gacctgggcgtcacccgcgttggccaccgcatgaacatcgatcgtgccctcaagttcttc
ctggagaggtga
DBGET
integrated database retrieval system
