KEGG   Alligator mississippiensis (American alligator): 102566879Help
Entry
102566879         CDS       T03087                                 

Gene name
LIG1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03030  DNA replication
amj03410  Base excision repair
amj03420  Nucleotide excision repair
amj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:amj00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    102566879 (LIG1)
   03410 Base excision repair
    102566879 (LIG1)
   03420 Nucleotide excision repair
    102566879 (LIG1)
   03430 Mismatch repair
    102566879 (LIG1)
Enzymes [BR:amj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102566879 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     102566879 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     102566879 (LIG1)
DNA replication proteins [BR:amj03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    102566879 (LIG1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     102566879 (LIG1)
DNA repair and recombination proteins [BR:amj03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     102566879 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     102566879 (LIG1)
   MMR (mismatch exicision repair)
    Other MMR factors
     102566879 (LIG1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 102566879
NCBI-ProteinID: XP_014458576
UniProt: A0A151PH33
LinkDB All DBs
Position
Un
AA seq 954 aa AA seqDB search
MQRSIMSFFQPVKGAKAEESRPLEDEHATKKMPEKVEKQSNGLGHCANSPVKPIGKRSLR
RIIESDSEEEEPEPAVIAEEGQMQVETPKKASSKQELVHPAQSELSADSPSPSSSQSAKN
SSDGTDTTHSDIPRRRTARKQMPRSKIEMATSRENGHPKEPVAKRLREEPDPRDETGERA
KVAAESMEMQEVKGQSSEEELTKGKGTSGEAAGNKDKIDKTGGEAAAQKKSEPSKPSRAI
SNFFAPRKAPLAKTETGEASAATTMDESSVLKGSAAASGKQGNQMNTSSSEAAVLLDPVE
YNPSKSSYHPVQDACWGPGQRVPYLAVARTFETIEEVSARLKNIETLSNLFRSVIALSPS
DLLLCIYLCLNRLGPAYEGLELGIGESILMKAVAQATGRQLDKIKAEAQEKGDLGLVAES
SRSNQRTMFTPPKLSAIGVFNKFQEIARMTGSASMNKKIDIIKGLFVACRHSEARYVARS
LSGKLRIGLAEQSVLSAIAHAVSLTPPGQSCPPEVLDASQGKSADVRKTWLEEQAQILKQ
IFCELPNYDIIVPVLLEHGMESLPQYCKITPGIPLKPMLAQPTKGIGEVLKRFEEAAFTC
EYKYDGERAQIHILENGDVYIYSRNQENNTSKYPDIVSRIPKVKKDSVQSCILDTEAVAW
DPEKKQIQPFQVLTTRKRKDVEAAEIKVQVCLYAFDMLYLNGESLVKQPFSRRRQLLHEL
FVETEGEFLFATSMDTCNTDEISEFLDQSIKDSCEGLMVKTLDVDATYEIAKRSHKWLKL
KKDYLEGVGDTLDLVVIGAYLGKGKRVGMYGGFLLACYDEESEEYQSICKIGTGFSEETL
EKHYSFLKDLVLEKPRAYYRWDSSAEPDHWLDAVQVWEVKCADLSISPVHKAAIGLVDEE
KGISLRFPRFVRVRDDKKAEEATTSTQVAELYKKQQQIQNQQVAGRGEGEDDFY
NT seq 2865 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgctccattatgtcatttttccagcctgtgaagggagcaaaggcagaggagagc
agacctctagaagatgagcatgcgactaaaaagatgccagagaaggttgagaagcagagc
aatggtcttggtcactgtgcaaactccccagtgaagcctataggcaagaggtccttgcgc
cgaatcattgagagtgacagtgaagaggaggagcctgagccagcagtcatagcggaggag
gggcagatgcaggttgagactcctaagaaagccagcagcaagcaggagctggtgcaccct
gctcagtctgagctctctgcagacagcccgtcaccaagcagcagccagtctgctaaaaac
agttctgatgggactgacaccacccactctgacatccccaggcgcaggactgctcgcaag
cagatgcccagaagcaaaatagagatggcgacaagcagagagaatggccaccccaaagaa
ccagttgccaaaagattgagagaagagccagacccaagagatgagactggtgagagagca
aaggttgcagcagagtctatggagatgcaagaggtgaaagggcagagttcagaggaagag
ttaaccaagggtaagggcacctcaggggaagcagctggtaacaaggacaaaattgacaaa
actggaggagaagcagcagcccagaagaaatctgagccttccaagcccagcagagccatc
tccaacttctttgcccccaggaaggcaccattggcaaagacagagacaggagaagctagt
gcagccaccacaatggatgagtcttctgtcctgaagggctctgctgcagcaagtggcaag
cagggcaaccagatgaataccagttcttctgaggctgctgtgctgctggatcctgtggag
tacaatccttcgaagagcagctaccaccctgtccaggatgcctgctggggtcctgggcag
agggtcccctacctggcggtagctcgtacctttgagacaattgaggaggtgtctgcccga
ctgaagaacattgagactctgagcaacctcttccgatcggtcatcgccttgtccccatct
gacctgctgctctgcatctacctctgcctgaaccgcttgggcccagcctatgaggggcta
gagctgggcattggcgagagcatccttatgaaagctgttgcacaagctacaggtcgacag
ttggataagatcaaggctgaggcccaggagaagggtgacctgggtctggtggcagagagc
agccgcagcaaccaacgcactatgttcacaccacccaagctgagcgccattggggtcttt
aacaagttccaggaaatcgctaggatgacaggcagtgcttctatgaacaagaagattgac
atcatcaaggggttgtttgttgcctgtcggcactcagaagcccgctacgtagctagatca
ctgagcgggaagctccggatcgggttggcagagcagtcagtgttgtcagccattgctcat
gctgtgtctctcactcccccaggacaaagctgccctccagaggtgctggatgcaagccag
ggcaagtctgcagacgtacgcaaaacctggctggaggagcaggcccagattctcaaacag
atcttctgtgagctgccaaactatgacatcattgttcctgtcctgttagagcatggaatg
gagagcctgccacagtactgcaagatcaccccagggatcccactgaagcccatgctggcc
cagcccaccaagggcataggggaggtactgaagcgcttcgaggaggctgccttcacttgc
gagtacaagtatgatggggagcgagcccagatccacatactagagaatggggatgtgtac
atctacagccgcaaccaagagaataatacctccaagtaccctgatattgtcagcaggatc
cccaaggtgaagaaagacagtgtgcagtcatgtatcctggacacagaggctgtggcctgg
gaccctgagaagaagcagatccagccgttccaggtgttgactacccggaagcggaaagat
gtggaagctgctgagatcaaagtgcaggtgtgtctgtatgccttcgacatgctgtacctc
aatggagagtccctggtgaagcagcccttctccaggcgccggcagctgctgcatgagttg
tttgtggagacagagggggagttcctgtttgccacttccatggacacatgcaatacagat
gagatctcggagttccttgaccagtccatcaaagactcctgtgaggggctcatggtcaag
accctggacgtggatgccacatatgagattgccaagagatcccataaatggctgaagttg
aagaaggattacttggagggtgttggagacacactggacttggtggtgattggtgcctac
ttagggaaaggcaagcgtgtgggcatgtatggaggcttcctgctggcctgctatgatgag
gagagtgaggagtaccagagcatctgcaagataggaactggcttcagtgaagagaccctg
gagaagcattacagttttctcaaggaccttgtactggagaagccaagagcttattaccgc
tgggacagcagtgcagagcctgaccactggctagatgcagtgcaggtgtgggaggtgaag
tgtgccgacctgtccatctcgcctgtgcataaggcagctattggcctggtagatgaggag
aaaggtatctccttgcgctttccccgctttgtgcgtgttcgtgatgacaagaaggctgag
gaagccaccaccagcacccaggtagctgaactctacaagaagcagcagcagattcaaaac
cagcaggtggcagggaggggtgagggagaagacgacttctattaa

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