KEGG   Amycolatopsis mediterranei S699: AMES_5213
Entry
AMES_5213         CDS       T02190                                 
Symbol
lig
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
amm  Amycolatopsis mediterranei S699
Pathway
amm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:amm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AMES_5213 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amm03400]
    AMES_5213 (lig)
Enzymes [BR:amm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AMES_5213 (lig)
DNA repair and recombination proteins [BR:amm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AMES_5213 (lig)
SSDB
Motif
Pfam: LigD_N DNA_ligase_A_M
Other DBs
NCBI-ProteinID: AFO78749
LinkDB
Position
5861560..5862627
AA seq 355 aa
MADKLEEYRGKRARDRTSEPWPDGPPAPGDNDLFVIQEHHATRLHWDFRLERDGVLVSWA
VPKGLPLSPGVPRLAVHTEDHPMEYLTFSGEIPAGEYGGGRMTVWDTGKYETLHWNDHKV
EVVFHGERARGKYLFTNRHDEDDRDWTLRRLDPAEPGHEDAPEFVEPMTAVPGELPADDD
EWAYEFAWGGLRTMLLVCGGRVTAHDETGADVTARYPELHKLGEQLGSTEVLLDGEVVVV
KDGKPDPDGLDERRRADGAAAKRLKASCPVFYFASDVLHLEGRATLELPYTKRRELLDGL
PIEDRHWQVPRYYLGGGEAVAGASRQHGLPGVVAKRADSPYQPGGGPGDWLLIRN
NT seq 1068 nt   +upstreamnt  +downstreamnt
atggccgacaaactcgaggaataccgcggcaagcgcgctcgcgaccgcacctccgagccc
tggccggacggcccgcccgcccccggggacaacgacctcttcgtcatccaggagcaccac
gccacccggctgcactgggacttccggctggaacgcgacggggtgctcgtgtcgtgggcg
gtgccgaagggcctgccgctctcccccggcgtgccgcggctcgccgtgcacaccgaagac
caccccatggagtacctgaccttctccggcgagatccccgcgggcgagtacggcggcggc
cggatgaccgtgtgggacaccgggaagtacgaaaccctgcactggaacgaccacaaggtc
gaggtggtcttccacggcgaacgcgcgcgcggcaagtacctgttcaccaaccggcacgac
gaagacgaccgcgactggaccctgcggcgcctcgaccccgccgaacccggccacgaagac
gcgcccgagttcgtcgagccgatgacggcggtcccgggcgagctgcccgcggacgacgac
gagtgggcctacgaattcgcctggggcggcctgcgcacgatgctgctggtgtgcggcggc
cgcgtcaccgcgcacgacgaaaccggcgccgacgtcacggcgcgctatcccgagctgcac
aagctgggcgagcagctcgggtccacggaagtgctgctggacggcgaagtcgtcgtggtc
aaggacggcaagcccgacccggacggcctcgacgagcgccgccgggccgacggtgccgcc
gccaagcggctcaaggccagctgcccggtcttctacttcgcttccgacgtcctgcacctc
gagggccgggcgacgctcgagctgccgtacacgaagcgccgggagctgctcgacggcttg
ccgatcgaggaccggcactggcaggtcccgcggtactacctgggcggcggcgaggccgtc
gcgggcgccagccgccagcacggcctgcccggcgtcgtcgcgaaacgggccgacagcccg
taccagccgggtggcggccctggcgactggctgctgatcaggaactga

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