Acaryochloris marina: AM1_1187
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Entry
AM1_1187 CDS
T00617
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amr
Acaryochloris marina
Pathway
amr03030
DNA replication
amr03410
Base excision repair
amr03420
Nucleotide excision repair
amr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AM1_1187 (ligA)
03410 Base excision repair
AM1_1187 (ligA)
03420 Nucleotide excision repair
AM1_1187 (ligA)
03430 Mismatch repair
AM1_1187 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amr03032
]
AM1_1187 (ligA)
03400 DNA repair and recombination proteins [BR:
amr03400
]
AM1_1187 (ligA)
Enzymes [BR:
amr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AM1_1187 (ligA)
DNA replication proteins [BR:
amr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AM1_1187 (ligA)
DNA repair and recombination proteins [BR:
amr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AM1_1187 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AM1_1187 (ligA)
MMR (mismatch excision repair)
DNA ligase
AM1_1187 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AM1_1187 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
ABW26224
UniProt:
B0C308
LinkDB
All DBs
Position
complement(1167699..1169726)
Genome browser
AA seq
675 aa
AA seq
DB search
MNTVSSSDQARVQELRQLLQKASYAYYGLDAPLMEDAVYDQLYHELVDLEAQYPQLITPD
SPTQRVGERPATQFVSVQHRIPLYSLENAFDRGDMDTWDERWHKLVPNLSQEPGYVTELK
IDGSALALTYENGLLVRGTTRGDGTKGEEITQNVRTIRSIPLRLNIEHPPEWLEVRGEAF
LGLQVFDQINRDRIQAGEAEFANPRNAAAGTLRQLDSKVVAERKLDFFAYTIHISGPTDD
LALPQTQWQALETLKQLGFRVNPNRRQCESLAEVQTYYDDWSLKRLDLPYLTDGVVIKLD
NLGVQDELGFTQKFPRWAIAWKYPPEEAATRIEQITVNVGRTGALTPVAEFKPVQLAGTT
VSRATLHNRDRISELDIHIGDTVVVRKAGEIIPEVLRVLPELRPAGAQPYQMPTACPSCG
QPAVQLETEAVTRCVNASCPAILRGSLIHWVSRGALDIDGLGEKIVGQLTDSQMVQSVAD
LYELNEDKLMDLDRMGTKLARKIVSAIATSKQQPWHRVLYGLGIRHVGSVNAQLLTENYP
TVDALMAVDGDKIATIHGIGPEIAQSVYEWFQTPTNQTLIQRLQSAGLQFEAIVSESTQP
QTLSGKTFVITGTLPTLKRDQAKQMIQDAGGKVTGSVSKNTSYVVVGADAGSKLTKAQSL
GINQLSEADLLALLQ
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgaacacggtatcctcttcagatcaagcgcgggtgcaagagctgcgacagttgctgcaa
aaagcgagctatgcctactatgggctggatgctcccctgatggaagatgccgtctatgac
cagctttaccatgagctggtagatttggaggcccagtatccccaattgattacaccggat
agtcccacccagcgggtgggggaacggcctgctacacagtttgtttcggttcagcatcgg
attcccctttatagtttggaaaacgcttttgaccggggggatatggacacctgggatgag
cgctggcataaattagtccccaacctcagccaagagccggggtatgtgaccgaactcaaa
atcgatggatcggcgttggccttgacctatgaaaacggcttattggtgcggggcaccacc
cgtggcgatggcaccaagggagaagagattacccaaaatgtaagaacgatccgctctatt
cccctgcgtttgaatattgaacatccccccgaatggctagaggtaaggggggaagcgttt
ttaggattacaggtatttgaccaaattaaccgtgatcgcattcaggcaggagaagccgag
tttgccaatcctcgcaatgccgccgctggcaccctccgtcagcttgactccaaagtagtg
gccgagcgcaagctggatttcttcgcctatacgatccatatttctggccccacggatgat
ttggcccttccccaaacccaatggcaagctttagaaaccctgaagcagctgggctttcgg
gttaatcctaatcgacgccagtgtgaaagtctggcagaggtgcagacctactatgatgac
tggtccctaaaacgtctcgatctaccctatttgaccgatggagtggtgattaagctggat
aacttaggggtacaggacgaactggggtttacccagaagtttcctcgctgggcgattgcc
tggaagtatccaccggaagaagcggccactcgcatcgagcaaattacagtcaatgtgggt
cggactggcgccctcactcccgtggctgaatttaaacccgtccagttagcggggacaaca
gtctcacgagcgacgctgcataatcgagatcgcatctcggaactcgacatccatattggc
gatacggtggtggtccgtaaagccggagaaattattcctgaagtgttgcgggttctgcct
gagttacgacctgcgggggctcagccctaccagatgcccacggcctgcccgagctgtgga
cagcctgccgtgcagcttgaaacggaagcagtaacccgctgtgtgaatgcctcttgccct
gccatcttgcgcggatcgctgattcactgggtcagccgaggggctttagatattgatggg
ttgggagaaaagattgtcggtcagttgacggattcccaaatggtgcagtccgtggctgat
ttatatgaactgaatgaagacaagctgatggacttggatcggatggggacgaaactagct
cggaaaattgtgagtgcgatcgcaacctccaaacaacaaccctggcatcgagtcctgtat
ggattgggaattcggcatgtaggcagtgtcaacgctcagttactgaccgaaaactatcca
acggtagacgcattaatggccgtggacggcgataagatcgcaaccatccacgggattggc
cctgaaattgcccaatctgtttatgaatggtttcaaacccccacgaaccaaactctgatt
cagcgcctacaatctgcggggctgcagtttgaagccatcgtatctgaatccactcagcct
caaaccttatcgggaaaaacctttgtgattaccggaacattaccgaccttgaaacgcgat
caggccaagcagatgatccaggatgcagggggcaaagtcaccggatccgtgagtaaaaat
acatcctatgtggtggtcggtgcagatgctggctctaaacttacaaaagcacaatcatta
ggaattaaccaactatcggaagccgatctcctggcactattacagtag
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integrated database retrieval system
