Acaryochloris marina: AM1_3594
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Entry
AM1_3594 CDS
T00617
Symbol
rpoC2
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amr
Acaryochloris marina
Pathway
amr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AM1_3594 (rpoC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amr03021
]
AM1_3594 (rpoC2)
03400 DNA repair and recombination proteins [BR:
amr03400
]
AM1_3594 (rpoC2)
Enzymes [BR:
amr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AM1_3594 (rpoC2)
Transcription machinery [BR:
amr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AM1_3594 (rpoC2)
DNA repair and recombination proteins [BR:
amr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AM1_3594 (rpoC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Peptidase_M23
Apocytochr_F_C
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ABW28584
UniProt:
B0C385
LinkDB
All DBs
Position
3646502..3650494
Genome browser
AA seq
1330 aa
AA seq
DB search
MAENSTHSPREATPPAFCNKIVNKGQLKSLVHWAFTHYGTARTAEMADHLKDLGFRYATK
AGVSISVDDLQVPPSKRRLLETAEEEIRVTEDRYTRGEITEVERFQKVIDTWNGTSEELK
DEVVKNFKSNNPLNSVYMMAFSGARGNLSQVRQLVGMRGLMADPQGEIIDLPIKTNFREG
LTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIRELDCGTQRGIPVQSMT
DGDRVLIPLANRLLGRVVLQEVVHPETGEVILPKNEAVSESIAKEIAKAGVEEVVVRSPL
TCEAARSVCQHCYGWSLAHAHLVDTGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVA
RQIRAPFNGKIKFPKKMRSRPFRTRHGEDALTAEVSTSLTLEGDDQTETFEITQNSTLLV
KDGQAVKMGQMLAEVAAAGRNVRKTTEKATKDVASDLAGEVQFSNLVPEEKHDRQGNTTR
IAPRGGLIWVLSGEVYNLPPGAEPTVKNDDYIEGEDVLAETKLVTEHGGVVRLPVQEEGK
GGREVEIITASVLLDQAKVWLESLQGRDQYVIEAQKKQRFLLKAAPGTKVINGQVVAELI
DDHYRTKTGGILKYAGVEVTKKGKAKQGYEVTQGGTLLWIAEESHEVNKDISLLLVEDGQ
YVEAGTEVVKDIFCQSNGVVEVTQKNDILREVLVKPGDLHLVDDPEAVKGKDQSLLNPGE
ELLPGLSTDELRYIECVTTPEGEAVLLRPVTEFPVPDQPSVPSQESINEAGRAICLKAVQ
RLPYKDGERVKSVEGVDLLRTQLVLEIDTDAPQIAADIEILPDEKDEEVSRLQLVILETL
VIRRDVSADQTQGSTKTRLLVEEGQQIDPGAVVARTEIKAKQGGKVRGIRSGNEATRRIL
LMTDDDLITIETQGKATSASEGELLRAGDEVAAGVTVAESCQVIKVQDGQVTLRIARPYL
VSPGAVLQIDDQDLVQRGDNLALLVFERTKTGDIIQGLPRIEELLEARKPKEMCTLAQRS
GTCQVIYNDDDSIEVKIVEQDGTITDYPIGPGQNPIVLDGQTVEAGEAVTDGPLNPHDIL
EIYFRFHRETKGVYESALLSLQKVQNFLVNGVQSVYQSQGIDIADKHIEVVVRQMTSKVR
IDDGGDTTMLPGELIDLYQVEQVNAAMSITGGAPAEYTPVLLGITKASLNTDSFISAASF
QETTRVLTEAAIQGKSDWLRGLKENVIIGRLIPAGTGFNSYDDGGLGEPDPSFEGMPFTD
DDDVIDDRTARNYNINDVKPFSGERPAYDPSKPGEQQRSMLGIDPAAVGDDTLIDDQVAE
KLNANLEGDQ
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaattccacccattcccctcgcgaggcgactccaccagccttttgcaacaaa
attgtgaataaaggtcagctgaagtcactggttcactgggcatttacccactatggaacc
gctcggaccgccgaaatggcggatcatttgaaagatctaggatttcgatatgcgacgaag
gccggggtttccattagtgtggatgaccttcaagttcctccgagtaagcgacggctttta
gagactgctgaagaagaaatccgagtgacggaagatcgctacacacgcggtgaaatcact
gaagttgagcgattccaaaaggtgattgatacctggaacggaaccagcgaagaactcaaa
gatgaggtggttaagaatttcaagtccaataatcccttgaattcagtctatatgatggcg
ttttcaggagcgaggggtaacctatcccaggtccgccagcttgttggtatgcgcggactg
atggcggatcctcaaggagagatcatcgatttaccgattaagactaacttccgtgagggc
ttaacggttacggaatacattatttcctcatacggtgcccgtaaaggtttggttgatacc
gccttaagaacagctgactctgggtaccttacccgccgcttggtggacgtctctcaggac
gtgattattcgggaactcgattgtggaacccagcgagggattccagtgcagagtatgacc
gatggcgatcgcgttttgattcctttagccaatcggttgttagggcgtgttgttctgcaa
gaagtggttcaccctgaaacgggagaagtgattctgcctaaaaatgaggctgtttcagaa
tccattgccaaagagattgctaaggctggtgtggaagaagtggttgttcgctctccccta
acctgtgaagcagctcgctccgtttgccaacattgttatggttggagtctagctcatgcc
caccttgtcgatactggggaagctgttggtattattgcggcccaatctattggtgagcct
ggaacacagctaacgatgagaaccttccacacaggtggggtattcactggagaagtggct
cgccaaatccgtgcgccatttaacggcaaaatcaagtttcctaaaaagatgcgcagtcgt
cccttcagaactcgccatggggaagatgcattgactgctgaggtgagcacgagtttgacc
ttagaaggagacgatcaaactgaaacttttgaaattacccaaaactcgacactcttggtc
aaggatggccaagcggtgaaaatggggcagatgttggctgaagtggcggctgcaggacgc
aatgttcgcaaaactactgaaaaagcgacaaaagacgtggcctctgatctagctggagag
gttcaattctcgaaccttgttcctgaagagaagcatgaccgacagggtaatacgacgcgc
attgcgcctcgtggtggtttgatttgggtcttgtcgggggaagtctataacttaccgccg
ggtgctgagcctactgttaaaaatgacgactacattgaaggagaagatgttttagccgag
actaaactcgtgactgagcatggtggcgttgttcgcctgccggtacaggaggaaggcaaa
gggggccgagaggttgaaattattacggcttctgttttgctggaccaagctaaagtctgg
ctggaaagtcttcaaggccgtgaccagtatgtgattgaagcccagaagaagcagcgcttt
ttattgaaagcggctccagggactaaagtcattaatggtcaagtggttgctgagctgatc
gatgatcactatcgcactaaaaccggtggcatccttaaatatgctggcgttgaagttact
aaaaaaggcaaagccaagcaggggtatgaagtgacccagggggggacgctgctctggatt
gcagaagaatcccatgaggtgaataaagatatttctttactgttggtcgaagatggccaa
tatgttgaagcaggcacagaagtcgtcaaagatatcttttgccaaagtaatggggtagtg
gaagttacccagaaaaacgatattttacgagaagtgttggtcaaacctggggatctgcat
ttggtagatgatccagaagcagtcaagggtaaagatcagtctctgttaaatcctggggaa
gagttattgcctggattaagcacggatgaactgcggtacatcgaatgtgtcacaacaccg
gaaggtgaggcggttcttctcagacctgttactgagttccctgtgccggatcaaccgtct
gttccgtcccaagagtccattaatgaggcaggtcgcgcgatttgtttgaaggccgtgcag
cgccttccttacaaagatggtgaacgtgtgaagtccgttgaaggggtggatttactccgg
acacaattagtactagaaattgatacggatgcgccgcaaattgcagctgatattgagatt
ttgcctgatgaaaaggatgaagaagtctctcgtttacagctggtgattttagaaacccta
gtgattcgccgggatgtgtctgcagatcaaacccaaggaagcaccaaaacacggctcttg
gtggaagaggggcagcaaatcgatccgggtgctgtggttgcgcggactgaaattaaggcg
aagcaaggcggtaaagtccgcggtattcgtagtgggaatgaggcaactcgccggattctc
ttgatgacagatgatgatctgatcacgattgagactcaaggtaaagctacgtctgcctct
gagggagaactccttagagcaggggatgaagtcgctgccggcgtgacggtggccgagtct
tgtcaggttattaaagtgcaagatggccaagtgacattacggattgcccgcccttatttg
gtttcgcccggagcggtcttacaaattgatgaccaggatttggtccagcggggtgataat
ttagcgctgttggtgtttgaacgcacgaagacaggagatattatccagggtctacctcga
attgaagagttgctagaagctcgcaaacctaaggagatgtgtaccctggcgcaacgctcg
ggaacctgccaggtgatctacaacgatgatgacagtatcgaagtcaaaattgttgagcag
gatgggactattaccgactatcccatcggacctgggcaaaaccccattgttttggatggt
cagacggttgaggcgggcgaagcggtgaccgatggtccgctgaacccccatgacattctg
gaaatttatttccgattccaccgggagacgaaaggggtttatgaatctgcgttgctaagt
ttgcagaaggtccaaaatttcttagtcaatggtgtgcagtcggtgtatcaatctcagggg
attgatattgcggataagcatattgaagtggtggtccgtcagatgacctctaaggtccga
atcgatgatgggggtgataccacgatgctgccaggagagctaattgatctgtaccaagtg
gaacaggtgaatgcagccatgtcaattacgggtggtgctccggctgaatatacgcctgtg
ttattggggattaccaaagcatccttgaacacggatagctttatctcagctgcgagtttc
caagaaaccactcgagttctaactgaagccgcgattcagggcaaatctgattggttgcgc
ggtttgaaagagaatgtgattattgggcgcctaattcctgcgggtacaggttttaattcc
tatgatgacggtggtttaggagaacctgatccttcctttgaaggtatgccctttacggat
gatgatgatgtgattgatgaccgcacagcgcggaattacaacatcaatgatgtcaaaccg
ttctctggcgaacggcctgcttatgatcccagcaagcctggtgaacagcagcggtctatg
cttggcattgatcctgcggcagttggggatgataccttgattgacgatcaagtggctgag
aagctgaatgccaatctggaaggcgaccagtaa
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integrated database retrieval system
