Alkaliphilus metalliredigens: Amet_4124
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Entry
Amet_4124 CDS
T00551
Name
(GenBank) excinuclease ABC, C subunit
KO
K03703
excinuclease ABC subunit C
Organism
amt
Alkaliphilus metalliredigens
Pathway
amt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Amet_4124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amt03400
]
Amet_4124
DNA repair and recombination proteins [BR:
amt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Amet_4124
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
GIY-YIG
HHH_2
HHH_5
UVR
HHH_3
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ABR50205
UniProt:
A6TVI7
LinkDB
All DBs
Position
complement(4219070..4220938)
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AA seq
622 aa
AA seq
DB search
MFDIKEQLKLLPDKPGVYLMKNKANEIIYVGKAISLKNRVRQYFQSSNNQHPKVRAMVTH
INFFEYIVTDSELEALILECNLIKENRPKYNVLLRDDKTYPYIKVTMNETFPRVLKTRKV
LKDKAKYFGPYTNISALNETLEVIHQMYPIRVCGKNIEKMIERQERPCLNYHIRKCIGPC
TGMVNDETYQQMIHEIILFLGGKEDELIKKIEEKMKRAAEKMDFEGAAHYRDQRQALLDI
IERQKVVSVNDIDQDIIAMAKGEQESCVQVFFVRGGKLVQREHYILTTREDEDEKEILSA
FIKQFYGETNFIPKEVLVEREVEDQELMAQWLTNKRGNHVKVRAPLRGEKKSMIQLVKRN
AALTMGQREETQRKSKEKTEGAMVVLQEALGLADAIHRVEAFDISNTQGMESVGSMVVFE
GGKPKNKDYRRFKIKTIQGANDYGSIEEIIYRRYKRGVDETKAMIENTMTVQEGKFSLFP
DLIMVDGGLGQVTSVKKGLAALGILIPVCGMVKDERHRTRGLVYEGKEIPIERPSHLLRF
ITQVQDEVHRFAITYHRSLRTKSILHSVLEDIPGIGEKRRKSLMKHFESIDKMKQATIEE
LIEVEGLNRKVAENMYHFFRKQ
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacataaaggaacaactaaagctattaccagataagcctggggtttatttaatg
aagaataaagccaatgagattatctatgtaggaaaggccatttccttaaaaaatcgagta
aggcaatacttccagtcttctaataaccagcatcctaaggtaagagccatggtaactcat
attaattttttcgaatatattgtaacggactcggagttagaagccttaatattagagtgt
aatttaattaaagaaaatcgacctaaatacaatgtactgcttagagatgataaaacatat
ccttatatcaaggtgaccatgaatgaaacatttccaagggtattaaaaacccgtaaggtg
ctaaaggataaagcaaaatattttggtccatataccaatatcagtgcactaaatgaaaca
ctagaagtgatccatcaaatgtatcccattagagtatgtggtaaaaacatagaaaaaatg
attgaaagacaagaacgaccgtgtctaaactatcatattcgaaaatgtatcggcccttgt
accgggatggtgaatgatgagacatatcagcagatgattcatgagattattctcttttta
ggtggtaaagaagatgaattgattaaaaagatcgaagagaagatgaagagagcagctgaa
aaaatggattttgaaggagcggcacactacagagatcaaaggcaagcacttctagatatt
atagaaagacaaaaagtggtttctgttaatgacattgatcaagatattattgcaatggca
aagggagaacaagaaagctgtgttcaggtattctttgtacgtggggggaaattagtacaa
cgtgagcattatatactcaccactagggaagacgaagatgagaaagaaatcctctcggca
tttattaagcaattttatggagaaaccaatttcattcctaaagaagtgctagtggagcgg
gaagttgaagatcaagaattgatggcccaatggcttaccaacaaaagaggcaatcatgtc
aaggttagagcgccactgaggggcgaaaagaaatccatgattcaattggttaaaagaaat
gctgcccttaccatgggacaacgggaagagacccaaagaaagagtaaagaaaaaacagag
ggtgccatggtggtgctacaagaagcactgggtttagcggatgccattcacagggtagaa
gcctttgatatatccaatacccaaggtatggaatcagtgggatcaatggtggtttttgaa
ggggggaaacctaaaaataaagattacagaaggtttaagattaaaacaatacagggagct
aatgattatggtagtatagaggagattatttatagacgatataaaagaggcgtcgatgaa
acaaaggcaatgattgaaaatacaatgacagtgcaggagggaaaattttcgctttttcca
gacttgatcatggtagatgggggattaggtcaggtaactagtgtgaaaaaaggattggct
gcattaggaattttaattcctgtttgtggtatggtcaaagatgaacgtcatcgaaccaga
ggattggtttatgaaggaaaagaaatacccattgaaagaccttcccaccttttacgattt
attacccaagttcaggatgaggtccatcgatttgcaatcacatatcatcgaagcttgaga
acaaaaagtatacttcattcagtactagaggacattccggggataggagaaaaaagaaga
aaatccctgatgaaacactttgaaagtattgataaaatgaagcaagcaacaattgaggaa
ctaattgaagtagagggactcaatcgaaaggtagcagaaaatatgtatcacttttttaga
aagcaataa
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