KEGG   Amycolatopsis sp. BJA-103: BKN51_01545Help
Entry
BKN51_01545       CDS       T05296                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
amyb  Amycolatopsis sp. BJA-103
Pathway
amyb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:amyb00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BKN51_01545
Enzymes [BR:amyb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BKN51_01545
DNA repair and recombination proteins [BR:amyb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BKN51_01545
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Radical_SAM_C
Motif
Other DBs
NCBI-ProteinID: AUI57019
UniProt: A0A2N8MMF5
LinkDB All DBs
Position
318899..319864
Genome map
AA seq 321 aa AA seqDB search
MPHGTPKTRPVIYRRRVPEERITVEVEGRRLGLSNLDKVLYPAHGFTKREVLDYYRRIAP
ALLPHLRDRAATFRRFPDGVDGEPFYEKNVSRHAPDWVRTARLTNRGRRGGEETLDYPVV
GDLPTLMWAANLAALELHVPQWTVGPRGARKSPDLLVFDLDPGPPADVVDCCRVAETLSE
LLTEDGLTVYAKTSGNKGMQLYCPVRTRSDERTSEYAKAVAEELARRSPETVVARMTKAI
RPGRVFIDWSQNNTAKTTIAPYSLRGRAIPTVSTPVTWEEVEACRKAADLLFTADQVIER
VEEMGDLFGDIAEHRAAVPAR
NT seq 966 nt NT seq  +upstreamnt  +downstreamnt
atgcctcacggtaccccgaaaacccggcccgtgatctatcgtcgaagggtgcctgaagag
cggataacggtcgaagtcgagggacggcggctcgggctgtccaatttggacaaggtgctc
tacccggcgcacggtttcaccaaacgcgaggtgctcgactactaccgccggatcgccccc
gccctgctcccgcatctgcgagaccgggcagccacgttccgccgtttcccggacggtgtc
gacggcgaaccgttctacgagaagaacgtttcccggcacgcacccgactgggtgcgcacc
gcgcggctcaccaaccgcggccgccgcggcggtgaggagacgctcgactacccggtggtc
ggcgatctcccgacgctgatgtgggcggccaacctcgcggcgctggaactgcacgttcca
cagtggaccgtcggaccgcgtggcgcgcggaaatcgcccgatctgctggtgttcgatctc
gatcccggcccgcccgcggacgtcgtcgactgctgccgggtcgccgagacgctcagcgag
ctgctcaccgaggacgggctgaccgtctacgcgaagaccagtggcaacaagggaatgcag
ctgtactgcccggtgcgcacgcggtccgacgaacggacttccgagtacgccaaggcggtc
gcggaggagctcgcgcgccggtcaccggaaaccgtggtcgcccgcatgacgaaggcgatc
cgccccggccgcgtgttcatcgactggagccagaacaacaccgccaagaccaccatcgcg
ccctactccctgcgcggccgcgccatcccgaccgtgtccaccccggtgacctgggaggag
gtcgaggcctgccgcaaggccgccgacctgctgttcaccgccgaccaggtgatcgagcgc
gtcgaggagatgggcgacctgttcggcgacatcgcggagcaccgcgccgccgttcccgcc
cgatga

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