Alkaliphilus oremlandii: Clos_1938
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Entry
Clos_1938 CDS
T00607
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aoe
Alkaliphilus oremlandii
Brite
KEGG Orthology (KO) [BR:
aoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aoe03016
]
Clos_1938
Enzymes [BR:
aoe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Clos_1938
Transfer RNA biogenesis [BR:
aoe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Clos_1938
Prokaryotic type
tRNA splicing ligases
Clos_1938
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABW19476
UniProt:
A8MI44
LinkDB
All DBs
Position
complement(2046105..2047286)
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AA seq
393 aa
AA seq
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MEIIGAYNTAKVYTKNLESTAREQIEELCNQEFVKDSVIRIMPDTHAGAGCTIGTTMTIS
DKIVPNLVGVDIGCGMETVKLKEKNIELQKLDKIIYEYIPSGFDIRKKEHRYNDYIDYDD
LVCKKKVNINRAKLSIGTLGGGNHFIEVNRDQNKDLYLVVHSGSRNLGKQVAEYYQGLAY
KELINKERETLVRECKAEGREDEIECGIQNMNAIKISKHLSYLQGKNYEDYLNDMKIVQQ
YAVYNRKAIVDEIVTRMGLKIKEQFTTIHNYIDLDTMILRKGAISAQEGEKVLIPINMRD
GSLICIGKGNKDWNYSAPHGAGRLMSRKEAKESITMTEFKKSMEGIYTTSVNKSTLDECA
FAYKPMDEIIENIQDTVEIVDIIRPIYNFKAGE
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggagattataggggcttacaatactgcaaaggtatatacaaagaatttagagagcaca
gccagagaacagattgaggaattgtgcaatcaagaatttgtgaaagatagtgtgattcga
atcatgccggatacccatgctggtgcgggatgtaccataggaactaccatgacaataagt
gataagattgtaccgaaccttgttggtgtagatattggctgtggcatggaaaccgtaaag
ctaaaggaaaagaatatagagctacaaaaactggataaaataatctatgaatacattcct
tcgggctttgatattcggaaaaaagagcatagatacaatgactatatagattatgatgac
cttgtctgtaagaaaaaagtaaatatcaacagagcaaagttaagcattggaactctgggc
ggtggcaatcattttattgaagttaatagagatcagaataaagatctgtatttggttgtt
cattctggtagtcgaaatttaggaaagcaggtggcagaatactatcaaggtttagcgtat
aaagagcttatcaataaagaaagagaaacactggtaagagaatgcaaggcagaaggccgt
gaggatgaaatagaatgtgggattcaaaatatgaacgctataaaaattagtaagcattta
tcctacttacaaggaaaaaactatgaagactatctaaatgatatgaaaatagtgcagcaa
tatgccgtatataatcggaaggccatcgtggatgaaattgttactagaatgggactgaag
attaaagaacagtttacgaccatacataattatattgatttagatacgatgattttaagg
aagggggccatctctgcacaagagggagaaaaggttctgattcctatcaatatgagggat
ggaagtttaatctgcatcggtaaaggaaataaggattggaattattctgcaccccatgga
gcaggaagactcatgagcagaaaagaagcaaaggaatccattaccatgacagagtttaaa
aaatcaatggagggaatctataccaccagcgtaaataaaagtaccttagatgaatgtgct
tttgcatataaacctatggatgaaattattgagaacatccaagatactgttgagattgtt
gatattatcagaccgatttacaactttaaggcaggagagtaa
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