Asparagus officinalis (garden asparagus): 109848315
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Entry
109848315 CDS
T05243
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109848315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109848315
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109848315
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109848315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Glyco_hydro_84_hel
Motif
Other DBs
NCBI-GeneID:
109848315
NCBI-ProteinID:
XP_020273347
LinkDB
All DBs
Position
7:complement(65587665..65628030)
Genome browser
AA seq
2368 aa
AA seq
DB search
MIPLSSTLPSQIRFLLHSASDSNSDSIFRELCQFVDYGIEGSILLLGTCLDQLNLKEQDV
TGSQMKHEIVSSVFKYLLDKPNFCTVLCLALRGSLMNGEFLEELSKTLNLSIEQKIAVGL
ALSESEDLDFRTKGHNFCISQIEDLTVSSNLIVSNEHIQDIVLFLCRSEGLSKHVDSFTK
ILSLVPRNGSSLFAQAPVLADDISSINSSRQLELFYEGANSDFEAVLAEIEEEMSMADIL
KELGYGCTVNASHCKEILSLFLPLNEVTLSKLLGTIARSHVGLNDAQNIHSSFYSAFGGS
ATVDPSSLNTWNVDVLVDSIKQLAPKTDWTCVMENLDHEGFNIPDETSFSLLMSIYNKAC
EAPFPLHAICGSVWQNAEGQLSFLRHAVSAPPDVFTFAHCSRHLTYTDSANLSNGVGNQA
WSCLDLLDVLCQLAESGHASSVRLIIEHPLNQFPDVLLLGVAQINSAYNLLQYEVSSAVF
PIFLNDPMKNSILHHLWKVNPSLLLRGFSDARTDPNSIFRILDICQELKILSRVLDSAPF
HVSLRLAAVAYRKEQVHLEKWVNENLNMYKDTFFEDCLAFLDEIFSDAVNDVPHSSLQQS
HVAIWKAYQEACPLFFKILQANSGQIVSQKLMEEFKRLRTLFDAKIQSPGGTNSSTSEGS
QDDIEAEANSYFHQMFSGQLTVDAIVEMLARFKESSENRERLIFDCMIANLFEEYRFFPK
YPDRQLKLAAILFGTLIKHQLVTHLNLGFALRGVLDALRKSVDSKMFTFGIKALEQFVDR
LVEWPQYCNHILQISHLRGTHVELVSVIERALARISSSQAEANGGNSLHAVQQQGSISSS
VEGIEASETSWQFVNSSSAQFGQQLSPFHEKHQGFLGDRLKNNAMSINITKPLLAHATLP
SLVSGPIDLVANPKPTPLQAPASQQSTNVSTVVSSSPGFLRPSRGVAPAGMLRQPSYSTG
FGAALNIETLVAAAERRDTPIEAPASEVQDKILFMINNISIANTEAKAKEFTEILKEQYY
SWFAQYMVMKRASIEPNFHELYLKFLDKVNSKVLNMEIIKATYENCKVLLRSELIKSSSE
ERSLLKNLGSWLGKFTIGRNQALRAREIDPKALIIEAYEKGLMIAVIPFTSKILEPSQSS
LAYRPPNPWTMGILGLLVEIYNLPNLKMNLKFDIEVLFKNLGVDMKDVKPTSLLKDRVRE
VEGNPDFSTKDINVSQAPIVTEINSTIIPAMNQVDLQSETNSTSHPNVMTQYSSPLHPVP
ITMVEDEKVGPLIIPERVPSAQGLTQVAASQTPFSLSQLLPIIPNPESYIKINSKLSSLG
TPQVHRIMQMAMDKAVTEIIAPIIQRSVTIASRTTKELVLKDYAMESDENAVSRAAHLMV
ATLAGSLAHVTCKESLRVALSTHLRSLLQANVNSEYMDHIIQILITDNLDLGCAVIENVA
SDKAVELIDGEIGPSFASLRKQREAAGSAYYDAAVQGLFARVPEALRPKPGRLSVGQQRV
YDDFIRNIWQNQSSQSSSVVPTGPPGLAGVSVNSSLTRVFGSNSNQVNSIIYSSSQVSPG
FSSAQTLDLMQEEGDHGSAPHSISSMHEASDELIQPAAEISSPASSFPPNVASSELHIDE
ASTLTKDLGAVIPPSPMTQATESTGTVLSETLLTTGDALDKYQQLALKLETLILKDARGA
EVQGIIAEVPDIIVRCVSRDEAGLAVAQKVFKSLYENASNSILVAAYLAILAAIRDVCKL
VVKEVTSWVIYSDEDRKFNKDITIGLIHYKLLNLAEYNVHLAKLIDGGRNKSATEFAISL
VQTLVIHEPGFNSLELYNVIDALGKLALRPGSPESLRQLIEIARNNTNTTASLVDYTANE
EDKARQPRDKKVLSGRSLTNREDHIVAEISAADPTDFREQITHLFSEWCRMCEIPATNDT
AYDHHISQLHQHGLLKGDDTTDRFFHILTELCVVHCLAGEQITSPSTLQTTQQYQLLSFA
AVDAYEKLVVLILKYPSVDQASSRTILLSKILSAIVRVIQKDAEQRKSYFNPRPYFRLLV
NCLIDLSGPDAGFDGPNLQVFVLFANAFHALQPLKVPGFSFAWLELVSHRTFMPKLLTTT
APNGWPVFQRLLVDLFKFMEPYLRNAELGEPVHFLYKGTLRVLLVLLHDFPEFLCDYHFS
FCDVIPPSCIQMRNLILSAFPRNMRLPDPSTPNLKIDLLAEISQAPRILSDVDGALKAKQ
IKADIDEYLQTRPEGSTFLSELKQRLFLPLNEANLAGTRYNVPLINSLVLYVGMQAIQQL
QSRSASQHALTQQMIHNSPMDIYLVGAAIDIFQSLIKNLDSEGRYLFLNAVANQLRYPNS
HTHFFSFVLLYLFVEAGQVCVVFFSSLF
NT seq
7107 nt
NT seq
+upstream
nt +downstream
nt
atgatccccttatcttcaactctcccgagccagatccgcttcctgctgcacagcgccagc
gattctaactccgattcgatctttcgcgagttgtgccagtttgttgattatggaattgaa
ggaagtattttgttgctcggaacttgtttggatcaattaaatttaaaggagcaagatgtt
acgggttcacagatgaagcatgagattgtgtcctccgtttttaagtatttactagacaag
ccaaacttttgtactgtactttgcttagctttacgaggttcattgatgaatggagagttt
ctggaagaactttcgaagacactaaacctgtcaatagagcagaaaattgctgttgggctc
gctttgtcagaatctgaagacctggacttcagaactaaagggcacaatttctgcatttct
cagatcgaggacttgactgtgagttcaaacttgattgtatcaaatgaacatattcaagat
attgttctgttcctctgtcggagtgagggtctttcgaagcacgtggattcttttaccaaa
atcttatccttagtaccgcgtaatggcagctctttgtttgcacaagctccagtgcttgca
gatgatatatcctctatcaattcgtcgaggcaactcgaactattctatgagggagcgaat
agtgatttcgaggctgttctagcagagatagaggaggagatgagtatggctgacatcttg
aaagaattaggctatggctgtacagttaatgcttcacactgtaaagaaatactctctctt
ttcctgcctctcaacgaagttacactttctaagttacttggcacgattgctcgctctcat
gttggtctcaatgatgctcaaaatattcattcatcattctactcagcatttggtggcagt
gcaactgttgatccatcatcattaaacacttggaatgttgatgtccttgtagattcgatt
aagcagctggctcctaaaacagattggacttgtgttatggaaaatcttgatcatgaaggt
ttcaacattcccgacgaaacatcattttctcttctgatgtctatatacaataaagcttgt
gaggccccttttcccctccatgctatttgtggttcagtctggcagaatgcagaggggcaa
ttatcttttctgagacatgctgtgtctgcaccacctgatgtatttacatttgcacattgt
tcaagacacctgacatacacagattcagctaatctttctaatggagttggtaatcaggca
tggtcctgcctagaccttttggatgtattatgccaattagctgagagtggtcatgcaagc
tctgtccggttaattattgagcaccctcttaatcaatttcccgatgttttacttcttgga
gttgctcagattaattctgcctacaatctcctccagtacgaagtatcttccgctgttttc
cctatttttttaaatgatcctatgaagaacagcattctccatcatttatggaaagttaat
cctagcttgctcttgcgaggattttcagatgctcgaacagatcctaacagcatttttaga
attcttgacatttgtcaggaactgaagattttgtctcgagtgttggattcagctccattt
catgtcagtcttagattggctgctgttgcgtataggaaggagcaagttcatcttgagaag
tgggtgaatgaaaacttgaatatgtacaaagatactttttttgaggattgccttgctttt
ttggatgaaatattttctgatgctgtaaatgatgtgccccatagttctctacagcaatca
catgttgctatctggaaggcatatcaagaagcttgccctctattcttcaagattcttcaa
gccaactctgggcaaattgtttctcagaagcttatggaagaatttaagaggctacgtacc
ttgttcgatgcaaaaattcaaagtcccgggggaacaaattcgtcaacatcagaaggaagc
caagatgatattgaagcagaggcaaattcttatttccatcagatgttttctggacagttg
actgttgatgcaatagttgaaatgcttgctcgtttcaaagaatcttccgaaaatagggag
cggttgatcttcgactgcatgattgccaatctgtttgaagaatataggttctttcccaaa
tatccagatagacaactgaagttagctgctattctctttggtactcttataaagcatcag
cttgtgactcatcttaatctgggttttgctctgcgtggtgttcttgatgcattgcgcaaa
tctgttgattcaaagatgtttacttttggcatcaaggctttggaacaatttgttgaccgc
ttagtagagtggccacagtactgcaatcatatattgcaaatatctcatttacgtggcaca
catgtggagttggtttctgtcattgaacgagcactggcacgcatatcttcgagtcaggca
gaagctaatggaggaaacagtctccatgctgttcagcagcaaggctctatatcatcatct
gtagaaggcatagaggcatcagaaacctcatggcaatttgttaattcaagttctgcgcaa
tttggtcagcaactgtctcctttccatgagaaacatcaaggttttcttggtgaccggctt
aaaaacaatgctatgtctatcaacatcacaaagcctcttctagctcatgccacactgcct
tctctagtttctggacctattgaccttgttgctaacccaaagccaacccccttgcaagcc
ccagcgtctcagcagtctactaatgtttcaactgttgtatcatcatctcctggttttctg
cgtccttctcgtggtgtcgcaccggcaggcatgctacgacagccttcttacagcacaggg
tttggggctgcattgaatattgaaacgcttgttgcagctgctgaaagaagggacactccc
atagaggctcctgcatcagaggttcaagacaagatattattcatgatcaataacatatcc
attgcaaatacagaagctaaggctaaggagttcacagagattcttaaagagcagtactat
tcttggtttgcacaatatatggtgatgaagagggccagcattgaaccaaatttccatgag
ttatacttgaaattcttagataaagtcaattctaaagtattaaacatggaaatcattaaa
gccacttatgagaattgcaaggtgcttttgagatcggaacttataaaatccagttcagaa
gagcgatcattgcttaagaatcttggtagctggcttgggaaatttacaattggtagaaat
caagcgctaagggccagagagatagatcccaaagcactgataatagaggcatatgaaaag
ggattaatgattgcagtgattccatttacctcaaagattttggaaccatcccaaagcagt
ttggcatatcggccacctaacccatggactatgggcattcttggattactcgttgagata
tataatctgccgaatcttaaaatgaatctgaaatttgatattgaggtcttatttaaaaac
cttggtgtggacatgaaagacgttaagccgacttcacttcttaaagatagagttcgtgaa
gttgagggcaatccggatttttcaaccaaggatattaatgtatcccaagctccgattgtc
actgaaattaactcaactataattcctgctatgaatcaagtagatctgcaatctgaaact
aatagtacaagtcatccaaatgtcatgacccagtattcttctcctttacatcctgtgccg
attaccatggtggaggatgagaaagttggtccattgattatacctgaacgcgttccatct
gctcaaggattgacccaagttgcggcatcccaaacaccattttctcttagtcagcttttg
ccaattattcctaatcctgaatcttatattaaaatcaactctaagcttagttcattgggc
acaccacaagttcacagaattatgcaaatggctatggataaggcagtaacagagataata
gctcctatcatccaacgcagtgttactatagcaagccgaacaactaaagaacttgtatta
aaggactacgcaatggagtcagatgaaaatgctgtatctcgtgcagctcacttgatggtt
gccactttagctgggagtttagctcatgtcacttgcaaggaatctcttcgagtcgctctg
tcaactcacctccggagtttactgcaggccaacgttaatagcgagtatatggatcatatt
attcagattcttataactgataatcttgatcttggatgtgcggtgattgaaaatgttgcc
tctgataaggctgtagagttaattgatggggagattggcccttcatttgcttctttaagg
aaacagagagaggcagctggctcagcttattatgatgctgctgtgcaagggttatttgct
cgtgttcctgaagcacttcgccctaaacctggccgtttgtctgtcggacaacaacgggtt
tatgatgattttatcagaaacatatggcaaaatcagtctagccagagttcaagtgtggtt
cctactggtccacccggccttgccggtgtgtcggttaattcttctctcactcgtgtcttt
ggttccaattctaaccaggtgaactccattatctattcaagctcacaagtatctccaggg
ttcagttcggcacaaacattagatctgatgcaggaagagggtgatcatggttctgctcca
catagtatctcctcaatgcatgaggcaagtgatgagcttattcagccagctgcagaaatc
agttctccagcatcatcatttcctcctaatgttgcatcctccgaattacatattgatgaa
gcgtccacactgaccaaagacctaggagcagttattccgccatctccaatgactcaagcg
acagaaagcacgggcactgtgttatctgaaacattattgacaacaggagatgcacttgat
aagtatcaacagttggccctaaagcttgagacgttgattcttaaagatgccagaggtgca
gaagttcagggaattattgctgaggtgcctgatatcatagtgagatgtgtaagcagagat
gaggcagggttggcggtggctcagaaggttttcaagagcttatatgaaaatgcatcaaat
agtattcttgttgctgcatatcttgcaattttagctgccatacgagacgtttgcaagctt
gttgtcaaggaagtcacaagctgggtgatttattctgatgaagatcggaagttcaataaa
gatataactattggcctcatccattacaaattacttaaccttgctgagtacaacgttcat
cttgcaaagctgatagatggggggaggaataaatccgctacggaatttgctatctctctt
gtccagactttggtcattcatgaacctggctttaactcgctagagctgtacaatgtcatt
gatgcccttggaaagttggcactgaggcctgggtcaccagagtcattgcgacagctgatt
gaaattgcaagaaataacacaaacactacagcatcacttgttgactacacagctaacgag
gaagataaggcaagacaacctcgggacaaaaaggtcctttccggtcgttctttgacaaat
agagaggaccatattgttgctgaaatttctgctgcagatcctactgatttccgtgagcag
attactcatcttttctctgagtggtgtcgaatgtgcgagatccctgctacaaatgataca
gcttatgatcatcacatttcacagttgcatcagcatggtttactgaagggtgacgatacc
acagatcgttttttccatattctaacggagctttgtgttgtacattgtctagctggcgag
cagataacttctccttcaacacttcaaacaactcagcaatatcagcttttatcatttgca
gcagttgatgcatatgaaaagcttgtagtcttaattttaaagtacccttcagttgatcaa
gcatcaagtagaactattcttctgtccaagattctctcagcaattgtgagagtcatccag
aaagatgcagaacaaaggaaatcctatttcaatccaaggccgtattttagattgttagtc
aactgccttattgatcttagcggtcctgatgctggttttgatggtcccaaccttcaggtt
ttcgttcttttcgcaaatgctttccatgcattgcagcctctcaaagttcctggctttagc
tttgcatggcttgagttggttagccacagaactttcatgccaaaacttctcactaccact
gccccaaatggttggccagttttccagcgcttgctcgtggatttattcaagttcatggag
ccttacttgagaaatgctgagctaggagagccggttcactttttgtacaagggcacatta
agggtgttgcttgtattgcttcatgattttccagaatttctgtgtgattatcacttcagc
ttctgcgatgtgattcctcctagttgcattcagatgcggaatcttattctaagtgctttt
ccacgcaatatgaggcttcctgatccatctactcctaacttaaagatcgatcttctagct
gaaatcagtcaggccccccgtattctatctgatgttgatggtgctctgaaagcaaagcag
attaaggctgacatagatgagtatctacagacaaggccagaaggatctacttttttatct
gaactgaagcagagattgtttttacctttaaatgaagctaatctagcaggaacacgctac
aatgtaccactgatcaattcgcttgttctttatgtaggaatgcaggctattcaacaactg
cagagcaggtctgcttctcagcatgcactgacacagcaaatgatacataactctcccatg
gacatatatctagtgggtgctgctatcgacatatttcagagtttgattaagaacttggat
tctgaaggtcgctacctctttctgaatgctgttgccaatcaattgcgctatccaaatagc
catactcatttcttttcctttgtcctgttatacttatttgtggaggctggccaggtttgt
gttgtcttcttttcctcattattttga
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