Amycolatopsis keratiniphila: AORI_2000
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Entry
AORI_2000 CDS
T02678
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aoi
Amycolatopsis keratiniphila
Pathway
aoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AORI_2000 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoi03019
]
AORI_2000 (rne)
03009 Ribosome biogenesis [BR:
aoi03009
]
AORI_2000 (rne)
Enzymes [BR:
aoi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AORI_2000 (rne)
Messenger RNA biogenesis [BR:
aoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AORI_2000 (rne)
Ribosome biogenesis [BR:
aoi03009
]
Prokaryotic type
rRNA processing factors
AORI_2000 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
RD3
Motif
Other DBs
NCBI-ProteinID:
AGM04588
UniProt:
R4T1M2
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All DBs
Position
2153221..2156280
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AA seq
1019 aa
AA seq
DB search
MSNADTPAVTGGNTATPIAGQLAELPPRIRVHALAKLLGSNSRELMAKLGELGETVRSAQ
SSVTREVALKLAEALAGGDEPETAEEPVAEAPAAPEVEAEAKPEVKAEPEPAAPQVEAPS
RRVPPALAAPVTPEPPQPTTRPAKAAVHVPVFAAPSPVFLPPEPVTAKPARKPEPAFAPT
EEPASDEDETQPEQAEGQGTDEDGDDANGRRRRRRGRRGRGRGKGGDEGSAEAENEDEQP
SEAPRGRQQRAKDKDAETEEAGAESAEEASAEAEPDNDGESDSGSKRRRRRRRRKGGDDD
TAEATSDDPPNTVVHVRQAKAAETERPARDEVRSVRGSTRLEAKRQRRRDGREAGRRRAP
ILSEAEFLARRESVERTMVVAEKGESTQIGVLEDGVLCEHFVTSSGTGSIVGNVYLGRVQ
NVLPSMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKARKIEQALSTGDSVLVQVTKDPVG
HKGARLTTQISLPGRFLVYVPAGGATGISRKLPENERRRLKDILKRIVPEDAGVIIRTAS
EGISEEELDRDVRRLKAQWDVIKEKAEAGNGGKKNSAPVMLYEEPDLLVKVVRDLFTEDF
AKLEIQGDKAWDTIYNYVQHVAPDLADRVKRYTGTGSAFADHRIDEQITKALDRKVWLPS
GGYLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVID
FIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLLEAFSTPCEH
CKGRGVVVSTEPQRTGGGGNGHNHGGGGGGGTKEQGSRRSRGRGKGEDQGQNEPAAAKAE
TPPPAQRESVVSAVQAVANATKAAKGEHPHEATENAEGAALNGHAPQSAEPVSEPVAEAT
VEQAAEAAAEPVSEPVAEAPATELAGEPVTTPDDEAPAVREEEIAVVAESGPEPEAPEVP
VTPEAVVTEEVSEAPSSVQEETEPDVDVPAPAVRSTTRRRPRRAASRPAGPPVKASEKS
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgcggacacacccgccgtcaccggcgggaataccgccacacccatcgcaggt
cagctggccgaactgccgccccgcatccgggtgcacgccttggcgaagctgctcggatcg
aacagccgtgaactgatggccaagctcggtgagctcggcgagaccgtacgcagcgcgcag
tccagcgtcacccgcgaagtggcactcaagctcgccgaagccctcgcgggtggagacgag
cccgaaaccgccgaggagccggtcgccgaggcccccgcggctcccgaggtcgaggccgaa
gccaagcctgaggtcaaggccgagccggagcccgccgctccgcaggtcgaggcgccttcg
cggcgtgttccgcccgcgctggccgccccggtgaccccggagccgccgcagccgacgacc
aggcccgcgaaggccgccgtgcacgtcccggtgttcgccgcgccgtcgccggtgttcctg
ccgccggagcccgtcacggcgaagcccgcccgcaagccggagcccgccttcgcgccgacc
gaggagcccgcttccgacgaggacgagacgcagcccgagcaggccgaaggccagggcacc
gacgaggacggtgacgacgccaacggccgtcgccgccgtcgtcgcggacgtcgtggccgt
ggccgcggcaagggtggcgacgagggctcggccgaggccgagaacgaggacgagcagcct
tccgaagccccgcgcggtcgtcagcagcgcgcgaaggacaaggacgctgagaccgaagag
gccggcgccgagagcgccgaagaggcgtccgccgaggccgagccggacaacgacggcgaa
tcggacagcggcagcaagcgccgccgtcgccgccgccgtcgcaagggcggggacgacgac
accgccgaggccaccagcgacgacccgcccaacacggtcgttcacgtgcgccaggccaag
gccgccgagaccgagcgccccgcgcgggacgaggtccgcagcgtgcgcggctcgacccgg
ctcgaagccaagcgccagcgccgccgggacggccgcgaggcgggccgccgtcgtgcgccg
atcctgtccgaggccgagttcctcgcccgccgcgagtcggtcgagcgcaccatggtcgtc
gccgagaagggcgagtccacccagatcggcgtgctcgaggacggcgtcctgtgcgagcac
ttcgtgacgtcgtcgggcaccggctcgatcgtcggcaatgtgtacctcggccgagtgcag
aacgtgctgccgtcgatggaggccgccttcatcgacatcggccgcggccgcaacgccgtg
ctctacgccggcgaggtcgactgggacgccgccggtctcgagggcaaggcccgcaagatc
gagcaggcgctctccaccggcgattccgtgctggtccaggtcaccaaggacccggtcggg
cacaagggcgcccggctgaccacgcagatctcgctgccgggccgcttcctggtctacgtg
cccgcgggcggcgccaccggtatctcccggaagctcccggagaacgagcgccgccgtctg
aaggacatcctcaagcgcatcgtccccgaggacgccggtgtgatcatccgcaccgcgtcc
gagggcatcagcgaggaggagctggaccgggacgtccgccgcctcaaggcgcagtgggac
gtcatcaaggagaaggccgaagccggcaacggcggcaagaagaacagcgccccggtcatg
ctctacgaagagccggacctgctggtcaaggtcgtccgcgacctgttcaccgaggacttc
gcgaagctggagatccagggcgacaaggcctgggacaccatctacaactacgtgcagcac
gtggcgccggacctggcggatcgcgtcaagcggtacaccggaaccggctcggcgttcgcc
gaccaccgcatcgacgagcagatcaccaaggcgctggaccgcaaggtctggctgccctcg
ggcgggtacctggtcatcgaccgcaccgaagcgatgacggtcatcgacgtcaacacgggc
aagttcaccggatcgggtggcaacctcgaggagacggtgaccaggaacaacctggagtcg
gcggaggagatcgtccgccagctccggctccgggacatcggcggcatcatcgtcatcgac
ttcatcgacatggtgctcgaatccaaccgtgagctcgtgctgcgccggctgaccgaatgc
ctcggccgcgaccgcacccgtcaccaggtcgccgaggtcacctcgctcggcctggtgcag
atgacccgcaagaagatcggcaccgggctgctcgaggcgttctcgacgccatgcgagcac
tgcaagggccgcggtgtggtcgtctcgaccgagccgcagcgcaccggtggcggcggcaac
ggtcacaaccacggcggtggcggtggcggcggcaccaaggagcagggctcccgccggtcc
cgtggccggggcaagggcgaggaccaggggcagaacgagcccgccgcggccaaggccgaa
acgcctccgcccgcccagcgcgagtcggtggtttcggcggtccaggccgtggccaacgcc
acgaaggcggccaagggcgagcacccgcacgaggccaccgagaacgccgagggcgccgcg
ctgaacgggcacgccccgcagtcggccgagccggtttcggagcccgttgccgaagcgacc
gtcgaacaggcggccgaggcggccgctgagccggtctccgagccggtcgccgaggcaccc
gcgacggaactcgccggtgaaccggtgacgactccggacgacgaggctccggccgtgcgc
gaggaagagatcgccgtcgtcgcggaatcgggcccggagcccgaagcgcccgaggtgccg
gtgactcctgaggctgtcgtgacggaagaggtttccgaggctccttcttcggttcaggag
gagaccgagcccgacgtggacgtcccggccccggccgtgcgttccaccacccgccgtcgt
ccgcgacgggcggcctcacggccggccggtccgccggtcaaggcgtcggaaaagagctag
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