KEGG   Amycolatopsis keratiniphila: AORI_2000
Entry
AORI_2000         CDS       T02678                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
aoi  Amycolatopsis keratiniphila
Pathway
aoi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aoi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AORI_2000 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aoi03019]
    AORI_2000 (rne)
   03009 Ribosome biogenesis [BR:aoi03009]
    AORI_2000 (rne)
Enzymes [BR:aoi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     AORI_2000 (rne)
Messenger RNA biogenesis [BR:aoi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AORI_2000 (rne)
Ribosome biogenesis [BR:aoi03009]
 Prokaryotic type
  rRNA processing factors
   AORI_2000 (rne)
SSDB
Motif
Pfam: RNase_E_G IF2_N RD3
Other DBs
NCBI-ProteinID: AGM04588
UniProt: R4T1M2
LinkDB
Position
2153221..2156280
AA seq 1019 aa
MSNADTPAVTGGNTATPIAGQLAELPPRIRVHALAKLLGSNSRELMAKLGELGETVRSAQ
SSVTREVALKLAEALAGGDEPETAEEPVAEAPAAPEVEAEAKPEVKAEPEPAAPQVEAPS
RRVPPALAAPVTPEPPQPTTRPAKAAVHVPVFAAPSPVFLPPEPVTAKPARKPEPAFAPT
EEPASDEDETQPEQAEGQGTDEDGDDANGRRRRRRGRRGRGRGKGGDEGSAEAENEDEQP
SEAPRGRQQRAKDKDAETEEAGAESAEEASAEAEPDNDGESDSGSKRRRRRRRRKGGDDD
TAEATSDDPPNTVVHVRQAKAAETERPARDEVRSVRGSTRLEAKRQRRRDGREAGRRRAP
ILSEAEFLARRESVERTMVVAEKGESTQIGVLEDGVLCEHFVTSSGTGSIVGNVYLGRVQ
NVLPSMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKARKIEQALSTGDSVLVQVTKDPVG
HKGARLTTQISLPGRFLVYVPAGGATGISRKLPENERRRLKDILKRIVPEDAGVIIRTAS
EGISEEELDRDVRRLKAQWDVIKEKAEAGNGGKKNSAPVMLYEEPDLLVKVVRDLFTEDF
AKLEIQGDKAWDTIYNYVQHVAPDLADRVKRYTGTGSAFADHRIDEQITKALDRKVWLPS
GGYLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVID
FIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLLEAFSTPCEH
CKGRGVVVSTEPQRTGGGGNGHNHGGGGGGGTKEQGSRRSRGRGKGEDQGQNEPAAAKAE
TPPPAQRESVVSAVQAVANATKAAKGEHPHEATENAEGAALNGHAPQSAEPVSEPVAEAT
VEQAAEAAAEPVSEPVAEAPATELAGEPVTTPDDEAPAVREEEIAVVAESGPEPEAPEVP
VTPEAVVTEEVSEAPSSVQEETEPDVDVPAPAVRSTTRRRPRRAASRPAGPPVKASEKS
NT seq 3060 nt   +upstreamnt  +downstreamnt
atgtcgaacgcggacacacccgccgtcaccggcgggaataccgccacacccatcgcaggt
cagctggccgaactgccgccccgcatccgggtgcacgccttggcgaagctgctcggatcg
aacagccgtgaactgatggccaagctcggtgagctcggcgagaccgtacgcagcgcgcag
tccagcgtcacccgcgaagtggcactcaagctcgccgaagccctcgcgggtggagacgag
cccgaaaccgccgaggagccggtcgccgaggcccccgcggctcccgaggtcgaggccgaa
gccaagcctgaggtcaaggccgagccggagcccgccgctccgcaggtcgaggcgccttcg
cggcgtgttccgcccgcgctggccgccccggtgaccccggagccgccgcagccgacgacc
aggcccgcgaaggccgccgtgcacgtcccggtgttcgccgcgccgtcgccggtgttcctg
ccgccggagcccgtcacggcgaagcccgcccgcaagccggagcccgccttcgcgccgacc
gaggagcccgcttccgacgaggacgagacgcagcccgagcaggccgaaggccagggcacc
gacgaggacggtgacgacgccaacggccgtcgccgccgtcgtcgcggacgtcgtggccgt
ggccgcggcaagggtggcgacgagggctcggccgaggccgagaacgaggacgagcagcct
tccgaagccccgcgcggtcgtcagcagcgcgcgaaggacaaggacgctgagaccgaagag
gccggcgccgagagcgccgaagaggcgtccgccgaggccgagccggacaacgacggcgaa
tcggacagcggcagcaagcgccgccgtcgccgccgccgtcgcaagggcggggacgacgac
accgccgaggccaccagcgacgacccgcccaacacggtcgttcacgtgcgccaggccaag
gccgccgagaccgagcgccccgcgcgggacgaggtccgcagcgtgcgcggctcgacccgg
ctcgaagccaagcgccagcgccgccgggacggccgcgaggcgggccgccgtcgtgcgccg
atcctgtccgaggccgagttcctcgcccgccgcgagtcggtcgagcgcaccatggtcgtc
gccgagaagggcgagtccacccagatcggcgtgctcgaggacggcgtcctgtgcgagcac
ttcgtgacgtcgtcgggcaccggctcgatcgtcggcaatgtgtacctcggccgagtgcag
aacgtgctgccgtcgatggaggccgccttcatcgacatcggccgcggccgcaacgccgtg
ctctacgccggcgaggtcgactgggacgccgccggtctcgagggcaaggcccgcaagatc
gagcaggcgctctccaccggcgattccgtgctggtccaggtcaccaaggacccggtcggg
cacaagggcgcccggctgaccacgcagatctcgctgccgggccgcttcctggtctacgtg
cccgcgggcggcgccaccggtatctcccggaagctcccggagaacgagcgccgccgtctg
aaggacatcctcaagcgcatcgtccccgaggacgccggtgtgatcatccgcaccgcgtcc
gagggcatcagcgaggaggagctggaccgggacgtccgccgcctcaaggcgcagtgggac
gtcatcaaggagaaggccgaagccggcaacggcggcaagaagaacagcgccccggtcatg
ctctacgaagagccggacctgctggtcaaggtcgtccgcgacctgttcaccgaggacttc
gcgaagctggagatccagggcgacaaggcctgggacaccatctacaactacgtgcagcac
gtggcgccggacctggcggatcgcgtcaagcggtacaccggaaccggctcggcgttcgcc
gaccaccgcatcgacgagcagatcaccaaggcgctggaccgcaaggtctggctgccctcg
ggcgggtacctggtcatcgaccgcaccgaagcgatgacggtcatcgacgtcaacacgggc
aagttcaccggatcgggtggcaacctcgaggagacggtgaccaggaacaacctggagtcg
gcggaggagatcgtccgccagctccggctccgggacatcggcggcatcatcgtcatcgac
ttcatcgacatggtgctcgaatccaaccgtgagctcgtgctgcgccggctgaccgaatgc
ctcggccgcgaccgcacccgtcaccaggtcgccgaggtcacctcgctcggcctggtgcag
atgacccgcaagaagatcggcaccgggctgctcgaggcgttctcgacgccatgcgagcac
tgcaagggccgcggtgtggtcgtctcgaccgagccgcagcgcaccggtggcggcggcaac
ggtcacaaccacggcggtggcggtggcggcggcaccaaggagcagggctcccgccggtcc
cgtggccggggcaagggcgaggaccaggggcagaacgagcccgccgcggccaaggccgaa
acgcctccgcccgcccagcgcgagtcggtggtttcggcggtccaggccgtggccaacgcc
acgaaggcggccaagggcgagcacccgcacgaggccaccgagaacgccgagggcgccgcg
ctgaacgggcacgccccgcagtcggccgagccggtttcggagcccgttgccgaagcgacc
gtcgaacaggcggccgaggcggccgctgagccggtctccgagccggtcgccgaggcaccc
gcgacggaactcgccggtgaaccggtgacgactccggacgacgaggctccggccgtgcgc
gaggaagagatcgccgtcgtcgcggaatcgggcccggagcccgaagcgcccgaggtgccg
gtgactcctgaggctgtcgtgacggaagaggtttccgaggctccttcttcggttcaggag
gagaccgagcccgacgtggacgtcccggccccggccgtgcgttccaccacccgccgtcgt
ccgcgacgggcggcctcacggccggccggtccgccggtcaaggcgtcggaaaagagctag

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