KEGG   Pseudarthrobacter phenanthrenivorans: Asphe3_04250Help
Entry
Asphe3_04250      CDS       T01435                                 

Definition
(GenBank) ATP-dependent DNA ligase LigD polymerase module;ATP-dependent DNA ligase LigD ligase module;ATP-dependent DNA ligase LigD phosphoesterase module
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
apn  Pseudarthrobacter phenanthrenivorans
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:apn00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    Asphe3_04250
Enzymes [BR:apn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Asphe3_04250
DNA repair and recombination proteins [BR:apn03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Asphe3_04250
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(447302..449830)
Genome map
AA seq 842 aa AA seqDB search
MTLTNLDKVIYPETGTTKADVLAYYAAVGHVLIPAAANRPATRKRWVNGVGTADKPGEVF
FQKNLEDSAPGWLPRAAITHKDRTIYYPMVNDPATLAWFGQINSLEIHVPQWQVDSHGNQ
LNPDRLVLDLDPGEGAGIEECVEVALLARSILEDVGLDPVPVTSGSKGIHLYAALDRSQT
SDQISAFARELARALESDHPDLAVSDMKKTLRKGKVLVDWSQNNAAKTTIVPYSLRGRPT
PMVAAPRTWEEIGSPGLTHLDYHEVMRRVREGIDPFAAVVRASGHSADDVAAHREDSHDG
NPRLAKYRSMRDPQATPEPFSGAAGSGDAFVIQEHHASRLHFDLRLEHEGVLVSWALPKG
VPESSGKNHLAVQTEDHPMDYLTFQGTIPKGEYGAGEMTIWDHGTYDLHKWINGKEVIVT
LKGSEGGGLGGTRKFALIHTGRGQGKESEGQWLIHLMDPEHRGGRRRHASPRGEQEEAGQ
PEAAGEPLQDEAPKNPVTTKTAPAKTATTADDSSAVAAAGAAPSPEDYRPMMATSGDAAD
LQGSNWQFELKWDGVRAIVLGDGGAVRIFSRNGIDVSRTYPEFTDRSCWPERPFVADGEI
VAVGPAGRPDFGLLQGRMKLTRPADVERARKAIPVQLMLFDLLHDDGTDLRRLPLAKRRQ
RLEDFFTPAGCPAQLSPVLEEQVEDILDSARELGLEGVMAKRTDSRYVSGQRTRTWIKLK
VEQTQEVVVGGWRPGKGGREDTVGSLLVGIPDGKKLQYAGRVGSGFSGRELAELRQTVDR
LARKTSPFLDVPRPDAADAHWVAPELVGEVTYSEWTGTGRLRHPVWRGWRLDKDPAEVVR
EG
NT seq 2529 nt NT seq  +upstreamnt  +downstreamnt
ttgaccctcaccaacctggacaaagtgatctacccggagaccggaaccaccaaggccgat
gtcctggcctactacgcggcagtgggacacgtcctgatcccggcggcggccaaccggccg
gccacgaggaagcgctgggtgaacggggttgggacggcagacaaacccggagaggtgttc
ttccagaagaacctcgaggactccgcgcccggctggctcccccgggcagccatcacgcac
aaagaccgcaccatctactaccccatggtcaacgatcccgccacgctagcctggttcggc
cagatcaactccctggaaatccacgtgccgcagtggcaggtggattcccacggcaaccag
ctgaaccctgaccggctggtcctggacctggatcccggcgagggcgcgggaatcgaggaa
tgcgtggaggtggcgctcctggcccgctcaatccttgaggatgttggcctggatcccgtc
cccgtgaccagcggcagcaaaggcatccacctttacgccgccctggaccggagccagacc
tcggaccagatctccgccttcgcccgtgagctcgcccgcgccctcgagtcggaccatccc
gacctcgccgtcagcgacatgaaaaagaccctccgcaagggaaaagtcctggtggactgg
agccagaacaacgcagccaagaccaccatcgtcccgtactccctgcgcggccgccccacc
cccatggtggctgcgccccggacttgggaggagatcggttcccccggcctcacccacctg
gactatcacgaggtcatgcggcgggtgagggagggcattgacccgtttgccgccgtcgtc
cgtgcgtcgggacattctgccgacgacgtggcggcacaccgggaagacagccacgacggc
aacccccgcctggccaagtaccgttccatgcgtgatccccaagccaccccggagcccttc
agcggcgctgccggcagcggggacgcattcgtaatccaggagcaccatgccagccgcctc
cactttgacctgcggctggagcacgaaggcgtcctggtgtcctgggccctgcccaagggc
gtcccggagtccagcggaaagaaccacctggccgtgcagaccgaggaccacccgatggac
tacctcaccttccaggggacgatccccaaaggggaatatggtgccggcgagatgaccatc
tgggatcacggcacctatgacctgcacaagtggatcaacggcaaggaggtcatcgttacc
ctgaaggggtccgagggcggcggcctgggcggcacccggaaattcgccctcatccacacc
ggccgcggacagggcaaggaatctgaagggcaatggctcatccacctcatggacccggag
catcgtggcggcaggcggaggcacgcgtccccgcggggggagcaggaggaagcggggcag
ccggaggcggccggggagccgctgcaggacgaggcgccgaagaacccggtgacgacgaaa
acagcgccggcaaagacggcaacgacggcggatgactcctctgcagtggcagcggcgggc
gcggcgccctccccggaggactaccggcccatgatggcaacctccggggacgcagccgac
ctacagggcagcaactggcagtttgaactcaagtgggacggagtccgcgccatcgtcctg
ggtgacggcggcgcagtacggatcttcagccgcaacggcatcgacgtgtccaggacctac
ccggagttcacggaccggagctgctggccggagcggccgttcgtggcggacggcgagatc
gtcgccgtcggacctgcaggacggcctgacttcggcctcctccagggcaggatgaagctc
acccggccggccgacgtcgaacgggcccggaaagccatccccgtgcagctgatgctcttc
gacctcctgcacgacgacggcacggaccttcggaggctgcctctcgcaaagcgccggcaa
cggctggaggacttctttacccctgcgggctgcccggcccagctttcccccgtcctggag
gagcaggtggaggacatcctggacagcgcccgggaacttgggctggaaggggtgatggcc
aagcgcacggacagccgctacgtgagcggccagcggacccggacctggatcaagctgaag
gtggagcagacacaggaggtggtggtgggcggctggcggccgggcaagggcggccgggag
gacaccgtgggatcactgctggtgggcatcccggacggaaagaagctgcagtacgcgggc
cgggtggggagcggcttcagcggccgggagctcgccgagctgcggcagacggtggaccgc
ctggcccggaagacgtcgccgttcctggacgtcccgcggccggatgccgcggacgcccac
tgggtagcgccggaactggtgggcgaggtgacctacagcgagtggaccggaacggggcgg
ttgcgacacccggtgtggcgggggtggcggctggacaaggacccggcagaggtggtccgg
gagggctga

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