KEGG   Actinomyces radicidentis: AXF14_12790
Entry
AXF14_12790       CDS       T04288                                 
Name
(GenBank) ribonuclease
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
ard  Actinomyces radicidentis
Pathway
ard03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ard00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AXF14_12790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ard03019]
    AXF14_12790
Messenger RNA biogenesis [BR:ard03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AXF14_12790
SSDB
Motif
Pfam: RNase_J_C Lactamase_B RMMBL Lactamase_B_2
Other DBs
NCBI-ProteinID: AMD88630
UniProt: A0A0X8JGZ3
LinkDB
Position
complement(3023956..3025590)
AA seq 544 aa
MRITPLGGLGEVGRNMTVFEVDGKLLVVDCGVLFPEEDQPGVDLILPDFSSIEDRIDDVV
GLVLTHGHEDHIGGVPYLLRLRDDIPIVGSQLTLAFVEAKLKEHRIRPSLRVVREHERVS
YGPFDLEFVAVNHSIPDAMACFIRTAAGKALITGDFKIDSLPIDGRITDLRSFARFADEG
VDLFLVDSTNAEVPGMIGHEAQIGPVLDNVFAESDQQIIVASFSSHVHRVQQVLDAAALH
GRKVALVGRSMVRNMGIAAERGYLKVPDGVLIDARDVNSVPDDERVLMVTGSQGEPMAAL
SRMAHGEHRSVTVEPGDTVIFASSLIPGNENSVYRVINQLMRLGARVVHQGNAKVHVSGH
ASSEELLHVYNIVAPENVMPIHGEIRHLVANGALAVKTGVNPKNVVLAEDGVVVDLVDGR
ARIAGAVPCGYVYVDGSSVGEIDETELKDRRILSEEGFISVYAVVETKTGTILAGPDIQA
RGVAEDDEVLGEILPDVTKALQEALDKGNQDAHSLQQVMRRTVGRFVGRRLKRRPMIVPV
VIEA
NT seq 1635 nt   +upstreamnt  +downstreamnt
atgcgcatcaccccgctgggtggcctcggcgaggtcgggcgcaacatgaccgtcttcgag
gtcgacggcaagctcctcgtcgtcgactgcggcgtcctcttccccgaggaggaccagccc
ggcgtcgacctcatcctcccggacttctcctccatcgaggaccgcatcgacgacgtcgtc
ggcctcgtcctcacccacgggcacgaggaccacatcggcggcgtcccctacctcctgcga
ctgcgcgacgacatcccgatcgtcggctcccagctcactctcgccttcgtcgaggccaag
ctcaaggagcaccgcatccgccccagcctgcgcgtcgtccgcgagcacgagcgcgtctcc
tacggccccttcgacctcgagttcgtcgccgtcaaccactccatcccggacgcgatggcc
tgcttcatccgcaccgcggccggcaaggcgctcatcacgggcgacttcaagatcgactcc
ctgccgatcgacggccgcatcaccgacctgcgctccttcgcgcgcttcgccgacgagggc
gtcgacctcttcctcgtcgactccaccaacgccgaggtccccggcatgatcggccacgag
gcccagatcggccccgtcctcgacaacgtcttcgccgagtccgaccagcagatcatcgtc
gcgtcgttctcgagccacgtgcaccgcgtccagcaggtcctcgacgccgccgccctccac
ggccgcaaggtcgccctcgtcggccgctccatggtccgcaacatgggcatcgccgccgag
cgcggctacctcaaggtccccgacggcgtcctcatcgacgcccgcgacgtcaactccgtc
cccgacgacgagcgcgtcctcatggtgaccggctcccagggcgagccgatggccgccctg
tcccgcatggcccacggcgagcaccgctccgtcacggtcgagccgggggacaccgtcatc
ttcgcctcctccctcatcccgggcaacgagaacagcgtctaccgcgtcatcaaccagctc
atgcgcctcggcgcccgcgtcgtccaccagggcaacgccaaggtccacgtctccgggcac
gcctcctccgaggagctcctccacgtctacaacatcgtggcccctgagaacgtcatgccg
atccacggcgagatccgccacctcgtcgccaacggggcgctggccgtcaagaccggcgtc
aacccgaagaacgtcgttctcgccgaggacggcgtcgtcgtcgacctcgtcgacggccgc
gcccgcatcgccggcgccgtgccctgcggctacgtctacgtcgacggctcctccgtcggc
gagatcgacgagaccgagctcaaggaccgccgcatcctctccgaggagggcttcatctcc
gtctacgccgtcgtcgagaccaagaccggcacgatcctcgccggcccggacatccaggcc
cgcggcgtcgccgaggacgacgaggtgctcggcgagatcctccccgacgtcaccaaggcc
ctccaggaggccctcgacaagggcaaccaggacgcccactccctccagcaggtcatgcgc
cgcaccgtcggacgcttcgtcggccgccgcctcaagcgccgcccgatgatcgtcccggtg
gtcatcgaggcctga

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