Actinobacillus suis H91-0380: ASU2_07255
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Entry
ASU2_07255 CDS
T02262
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asi
Actinobacillus suis H91-0380
Pathway
asi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ASU2_07255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asi03400
]
ASU2_07255
Enzymes [BR:
asi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ASU2_07255
DNA repair and recombination proteins [BR:
asi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ASU2_07255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFU19589
UniProt:
K0G780
LinkDB
All DBs
Position
complement(1616339..1619827)
Genome browser
AA seq
1162 aa
AA seq
DB search
MQIFQQNRPLMSFIQFNLPLIAQQEGGKFQDHQTLGNLVGHSDTLAIAEAAAQFNGLSVV
VTPDTRTALRLEKALMQFSQLPVSVFPDWETLPYDNFSPHQDIISARLSALFHLQQGNKQ
IFLLPINTLLQKVCPPSYLANNVLLIKKGDRFSIQSLRLQLENAGYRAVEQVLEYGEYAV
RGALLDLYPMGAESPFRLDFFDDEIDSIRTFDVDSQRTIAEINEINLLPAHEFPTDSNGI
EHFRSKFREQFGEIRREPEHIYQQVSKGILNAGIEYWQPLFFEEMASLFDYLAENTLFIT
FDGIAEKAEQFHKDTAQRYESRRVDPMRPLLPPDKLWFSVDEVNRGLKAYPRLTLSAEKV
RKSAAKQNANIDKLPELAINSQLKDPFDAFNKFRSKFDGQLLFSVESEGRRETLLELLSP
LKIKPKQVKSLAEIDSQISLIISPLDQGFIIENVSGQNLAIICETDFLGEKVQTKRSEKN
RKTVNPDTLIRNLAELKIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLQYANEAKLYV
PVASLHLISRYIGGADETAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGF
AFAYDRDSFMQFSHTFPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRA
TFLAVENHKQVAVLVPTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAE
GKVDILVGTHKLLQEDVQFRDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPR
TLNMALNGMRDLSIIASPPARRLTIKTFVRQHDDLVVREAILREILRGGQVYYLHNDVAT
IENCATKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTAN
TIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKTLTKDAQQRLEALSSIDNLGA
GFVLATHDLEIRGAGELLGSEQSGQIESIGFSLYMDLLENAVKALQEGREPTLEEITQNQ
VEIELRIPALLPDDYVPDVNMRLSFYKRIASAESVDALKDLKVELIDRFGVLPEATKNLF
QITQLRHLATPLGLKKVDAGINGGYLEFKPSAQPDPMKFLQLIQSDKNVYKFEGAQKFRF
NLPLASNAERLEFVSALIEKLV
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaatttttcaacaaaatcgaccgcttatgtcatttattcagtttaatctgccttta
attgctcagcaagaagggggcaaattccaagatcatcaaacgctcggtaatttagttggg
cattcagatactttagccattgcggaagctgcggcgcagtttaatggtttaagcgtagta
gtaacaccggatacccgcaccgcattacgtcttgaaaaggctttaatgcaatttagccaa
ttgccggtttcggtctttccagattgggaaaccttgccttacgataatttttcaccgcat
caagatattatttccgcccgtctttccgccttgtttcatttgcaacaaggtaataaacag
atttttctattgccaatcaatacgctgttacagaaagtttgtccgccgagctatctcgcc
aataatgtattattgattaagaaaggtgaccgcttttcaattcagtcgttacgtttacag
ttggaaaatgccggttatcgagcagtggaacaagtattggaatacggcgaatatgcggtg
cgtggagcattgcttgacctctatcctatgggggcggaaagtccgttccgtttggatttt
tttgatgatgaaatcgattcgatccgcacctttgatgtggatagccaacgcacaatagcc
gaaatcaacgaaattaatttactgccggcacacgagttcccgaccgatagcaatgggatc
gagcattttagaagcaaattccgtgaacaattcggtgagatccgccgtgaaccggagcat
atttatcagcaagtcagtaaggggattttgaacgcagggattgaatattggcagccacta
ttcttcgaagaaatggcgagcctatttgattatttagcggaaaataccttatttattacc
tttgacggcattgcagaaaaagcagagcagttccataaagataccgctcagcgttatgaa
agtcgccgcgttgatccgatgcgtccgctactgccaccggacaaattatggttctcggtt
gatgaagtcaatcgtggcttaaaagcttatccacgtttgacgctaagtgcagaaaaagtc
agaaaatcggcagctaaacagaacgccaatattgataagctaccggaattagcgattaat
tcgcagttaaaagatccgtttgatgcgttcaataaattccgtagtaaattcgatgggcag
cttttattttcagtagaaagtgaaggtcgccgagaaaccttgcttgaattactttcaccg
ctaaaaatcaaaccgaaacaggttaaatcgttagcggaaattgattcgcaaatttcactg
attatttcaccgcttgatcaaggctttatcattgaaaatgtaagcggtcaaaatttggca
attatttgcgaaacggatttcttgggcgaaaaagttcaaacaaaacgttcggagaaaaat
cgtaaaacagtcaacccggatacgctcattcgtaaccttgcagaactcaaaattgggcaa
gcggtggtgcatttagaaaacggtgttggccgttatgcggggctaactgtgctggatgcc
ggcggtattaaagctgaataccttgtattgcaatatgcgaacgaggcgaagctctatgta
ccggtggcttcattacatctgatttcccgttatatcggtggggcggatgaaactgcgcca
ctacataaacttggttcggaagcatgggcgaaaacacgccaaaaagcagcggagaaaatc
cgcgatgttgcagcggaattacttgatgtgtatgcgaaacgagaatcgcaaaaaggcttt
gcgtttgcctacgatcgagacagttttatgcaatttagccacactttcccgtttgaagaa
actgaagaccagaaaaccgcaatcaatgcggtcattagcgatatgtgcttgccaaaagca
atggatcgccttgtctgtggcgatgtcggtttcggtaaaaccgaagtcgcaatgcgtgcc
actttcttagcagtggaaaatcataaacaggttgctgtgcttgtgccgactacgctttta
gcacaacaacatttcgagaatttcaaagatcgttttgcaaactatccgattaatgttgag
gtactttctcgttttaaaaccgctaaagagcaaaaagcgattttggaaaaggtggcggaa
ggtaaagtggatattttggtcggcacgcataaactgctacaagaagacgtgcaattccgt
gatctcggtttacttattattgacgaagaacaccgcttcggtgtacgtcagaaagagaag
atcaaacaattacgagctaatgtcgatattcttacgctcaccgcaacaccgattcctcgt
acgctgaatatggcgttaaacggtatgcgagatctttctattatcgctagtccgccggca
cgtcgtttaacaattaaaacctttgtgcgccaacatgatgatctggttgtgagagaagct
attctgcgtgaaattctgcgtggtgggcaagtgtattacctgcacaatgatgtggcaacg
attgaaaattgtgcgacaaaattagcagaattggtgccggaagctcggattgtgattggg
catggacaaatgcgtgaacgtgaattggaacgtgtgatgagcgatttttatcatcagcgt
tttaatttgttggtttgctcaaccattatcgaaacgggaattgacgtgccgaccgctaac
acgattattattgatcgtgcggataaattcggcttggcacagctgcaccagttacgtgga
cgtgtcggacgttctcatcatcaggcttacgcctatttgctgacaccaccgccaaaaaca
ttaaccaaagacgctcaacagcgtttggaagcgctcagttcgattgataaccttggtgcc
ggatttgtgctagcgactcacgatttagaaatccgtggagcgggcgaattgctcggctct
gaacaaagcggacagattgaaagtatcggtttctcactctatatggatctgcttgaaaat
gcagtaaaagcgttgcaagaagggcgtgaaccgactttagaagaaatcactcaaaatcag
gtagaaatcgaattacgcataccggcattgttaccagacgattatgtaccggatgtgaat
atgcgtttatcgttctataaacggatcgcttcggcagaaagtgttgatgcattgaaagat
ttgaaagtcgaacttatcgaccgcttcggagtattaccggaggcaacgaaaaatctattc
caaattactcagcttcgtcatttggcaacaccgctcggcttgaagaaagttgatgcaggg
attaacggtggctatttggaatttaaaccgagcgcacaacctgacccgatgaagttttta
caactgattcaatcggataagaacgtctataaatttgaaggcgcgcaaaaattccgcttt
aatttaccgcttgcaagcaatgcggaacgattggaatttgtttcagctttgattgaaaaa
ttggtttaa
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