Alteromonas stellipolaris LMG 21856: AOR13_2657
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Entry
AOR13_2657 CDS
T04153
Name
(GenBank) Exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
asp
Alteromonas stellipolaris LMG 21856
Brite
KEGG Orthology (KO) [BR:
asp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asp03400
]
AOR13_2657
DNA repair and recombination proteins [BR:
asp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AOR13_2657
Archaeal homologous recombinant proteins
AOR13_2657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_21
ABC_tran
cobW
AAA_22
nSTAND3
NTPase_1
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ALM91661
UniProt:
A0A0S1YMJ1
LinkDB
All DBs
Position
complement(3063787..3067458)
Genome browser
AA seq
1223 aa
AA seq
DB search
MKILTLRLKNLNALKGEWKIDFTQSPFIDNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LGTISATSNDIMTRGTSECLAEVEFDIKGKAYRAFWSMRRARGKADGNLQSADVELAEVE
SGKVLATQVRPKSEEIERLTGLNFARFTKSMMLSQGDFAAFLNANEGDRAELLEELTGTE
IYGQLSQAIHEKYKAAETTKREFKLKLEGVALLSEAQHNELSAQLDQFKTQLLTINTEIV
SLQERHRWQQACEQNQHELTKANAALVEANSVYEQAKDELALLVAGEPAELLRLPHSALS
QLCEDVQRIAKNLTLKQQQLPDLESQQQTRQAEFENSETNFATAKAHQQRFETLINEQII
PIDTEINKLSNRIETNQQSLADAKFKQGKAQESHQAYYDELEGKKRMLDELTTYLNANAA
NGKMAGEISGWKEKAARFSDDENTLAELTQKITTTQQLKDSAEADLTEKQHYKTNVVLLH
QQSADNVSQCEANLNQLLSNGDAASVNADITALNNNWPVLASCEQWQRLYISHTNSHADK
AKRLTTLLSSIETLKQERAELAASYKATQSHLKDVESLIKLDAELAHLRQALSPGDACPL
CGATEHDASLMNIDVPETIAKRDELTRTLENIEKLGTQKREQISTAEFEKQQCEKVVAEA
KTAFSQLEADWQQAMLTLNARVEISDIESFNQLQLSCKERQSRLSAQLSNIQASEAKLAD
AKNDTLLHQQQIDSINSEIALLTAKTSQLEGQLHDLNNTKSKVESALVNNRRTLINEIER
VGLTPDANITKWLTQKHNDVEAFQEKTHLHNSLSHELKALESKLVELSEAKASADKETQL
YSTRIQETEAKREVLLTKRHALFPEADIGAARREIQNTLSAKEQIFKKCDTHLREAQRAL
ENATAQLKVLTVELEEKQQAKQVKQVAFDTALQQSPFADETEFLNALLPYEERQRLLQKK
QLIEREQQNAQLLLGNVTQKHNTLLAHERASEWQQSTVEATQVSLNQKGEEKDRLLAQQG
QLFQQLESNRQAVEKQQSLINEMREFETSYDDITYLHSLIGSASGDKFRRFAQGLTLDNL
VRLANQQLDRLHGRYQLTRNTKDSLGLSVLDTWQGDVVRDTKTLSGGESFLVSLALALAL
SDLVSFKTSIDSLFLDEGFGTLDAETLDVALDALDNLNASGKMIGVISHIEAMKERIPTQ
LKVIKRNGVGLSALEKCYSATEI
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcttaccctcaggcttaaaaatttaaatgccttaaaaggagagtggaagata
gatttcacccaatctcctttcatcgacaacggcttgtttgccattaccggtcctactgga
gcgggtaaaacaacgttacttgatgctatttgtttagcgctctatcaccaaacgccacgc
ttgggcactatttcggccacctcgaacgatattatgactcgcggcacgtcagagtgcttg
gcagaagttgagttcgatataaagggcaaagcgtatcgcgcattttggagtatgcggcgc
gctagaggaaaagctgacggcaatttgcaatctgccgatgtggaattagcagaagtagaa
tctggtaaagtattggccactcaggtgagacctaagagcgaagagatagagcgccttact
gggcttaactttgcgcgctttacaaaatcgatgatgctatctcaaggtgatttcgctgcc
tttttaaatgcaaacgaaggcgacagggctgaattactagaagagcttaccggcactgag
atttatggccagttatctcaagcaattcacgagaaatataaagcagcagaaacgacaaaa
cgggaattcaagctaaagctagagggcgtagctttgctcagtgaagcgcagcataatgaa
cttagtgcgcagctggaccaattcaaaacccagctcctcactataaatactgagattgtc
tcgcttcaagagcgacatcgatggcaacaggcgtgtgagcaaaatcaacatgagctgact
aaggctaacgcggcattagttgaagcgaatagcgtttatgaacaggcgaaagacgaatta
gcgctattagtggccggcgagccagctgaattacttcgtttgcctcattctgcgcttagt
cagctttgcgaagatgtgcaacgtattgccaaaaatctcaccttgaaacagcagcaatta
cctgacctggaaagccagcagcaaactcggcaggccgaatttgaaaacagcgaaacgaac
tttgcgactgcgaaagcccaccaacagcgttttgaaaccttgatcaatgaacaaatcatt
ccgattgatactgaaatcaataagctttctaatcgtatagagacaaaccagcagtcatta
gcggatgcgaaatttaagcagggcaaggcgcaagaaagtcatcaagcatactatgatgaa
cttgaaggtaaaaagcgcatgctagatgagctaaccacctaccttaatgctaatgcggca
aatggtaaaatggcaggtgaaatcagtggttggaaagaaaaagcggcccgttttagcgat
gacgaaaatacccttgcagaattaacccaaaaaataacaacaacgcagcagcttaaagac
agcgctgaggctgacttaactgagaaacaacactacaaaacgaatgtggtgttgttacat
caacaaagcgcagataacgtttcacagtgtgaggctaacctcaatcaactacttagcaat
ggcgacgcggccagtgttaatgcagatataactgcgctcaataacaactggcctgttctt
gcttcttgcgaacaatggcagcggctttatatcagtcacacaaatagccatgcagacaaa
gccaaaagactaaccaccttgttatcaagtattgaaacccttaaacaagagcgagcagag
ttagcggcaagttataaagcaacgcaaagtcatttaaaagacgttgagtcgttaattaag
ctagatgctgagcttgctcatttgcgtcaagcgctctcgccaggcgatgcgtgccccttg
tgcggtgcaactgagcacgatgcttctttaatgaatatcgatgtgcccgaaactattgct
aagcgcgacgagttaacccgaacacttgagaatattgaaaagttgggtacgcaaaagcga
gagcaaatcagtaccgcagagttcgaaaaacagcagtgcgagaaggtggttgcagaggca
aaaactgccttttctcaactagaagccgactggcagcaggctatgttaacgttaaatgcg
agggttgaaatttcagatattgagtcatttaaccagcttcaacttagctgcaaagaacgt
caatctcgtttaagcgcacagcttagtaatatacaagctagcgaggctaaattggccgat
gccaaaaacgatacgcttttgcatcaacagcaaatagactctattaacagtgagatagcg
cttttaacagcaaaaacatcgcagctggaagggcagctacacgacttaaacaatacaaaa
tctaaagttgaaagtgcacttgtcaataaccgtcgcacacttattaacgagattgaaagg
gtggggttaacaccggatgcaaacataactaagtggcttactcaaaagcacaacgatgtg
gaagcgtttcaagagaaaacccatttacacaatagtttgtctcacgagttaaaagccctt
gaaagcaaattggttgagctaagcgaagctaaagcgtctgcggataaagaaacccagcta
tacagcacgcgtattcaagagactgaagcgaagcgcgaagtgctgcttactaaacgtcat
gctttattccccgaagcagatatcggcgctgctagacgtgaaattcaaaacaccctctcg
gcaaaagagcagatatttaaaaaatgtgatactcaccttcgtgaggcgcaacgagcgtta
gaaaatgctaccgcccagttaaaagtacttactgtagaattagaagagaaacaacaagcc
aaacaagtgaaacaagtcgccttcgataccgcattgcagcaaagcccatttgctgatgaa
accgagtttttaaatgcattattaccctatgaggagcgccagcgtttacttcaaaagaaa
cagttgattgagcgagagcagcagaatgcgcagttgttactgggtaacgtcacgcagaag
cacaacactctattagcacacgaacgcgcctctgaatggcaacaatcgactgttgaagcc
actcaggtcagcttgaatcaaaaaggtgaggaaaaagatcggttacttgcacaacaaggg
caactatttcaacaattagagagtaataggcaggcggttgaaaaacagcaaagcttaatc
aatgaaatgcgtgaatttgaaacttcgtatgatgatattacttatctacactcgcttatt
ggttcagccagtggagataaatttaggcgatttgcgcaaggtttaacgctagataatttg
gttcgacttgccaatcaacagctcgataggttgcacgggcggtatcaacttacccgcaac
acaaaagacagtttaggtttaagtgtattagatacgtggcagggtgatgtggtacgagat
actaaaacgctatcagggggcgaaagttttctggtgagtttagcgctagcgctggcactg
tctgatttagtgagctttaaaacaagcatagattctcttttcctcgatgaaggctttggt
acgctagatgccgaaaccctagacgtagcgttagatgcattagataacctaaatgctagc
ggtaaaatgattggtgttattagccacatagaagcaatgaaagaacgtattcctacccag
ctgaaagtcataaaacgaaatggagtagggttaagtgcgctggaaaaatgttactcagcg
acagaaatttga
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