Actinobacillus suis ATCC 33415: ASU1_02720
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Entry
ASU1_02720 CDS
T03246
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ass
Actinobacillus suis ATCC 33415
Pathway
ass03410
Base excision repair
ass03430
Mismatch repair
ass03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ass00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ASU1_02720
03430 Mismatch repair
ASU1_02720
03440 Homologous recombination
ASU1_02720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ass03400
]
ASU1_02720
DNA repair and recombination proteins [BR:
ass03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ASU1_02720
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ASU1_02720
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ASU1_02720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
RecJ_OB
DHH
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AIJ30818
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Position
600923..602518
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AA seq
531 aa
AA seq
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MQFLHRPHQLANIDAAVELLVDAYKQQLRIIIVGDFDADGATSTSLAILALRQLGFEKVD
YLIPDRFSQGYGLSLAVAEMVLAKGADIVMTVDNGISSFEGIDFLKEHGIKVLVTDHHLP
AESLPNADAMVNPNLADCTFPSKSLAGVGVAFYVMLALRGRMRELGCFKEQEPNLAELLD
LVALGTVADVVPLDHNNRILVHQGLNRIRSGHCRAGIRALAEVSKRDLSSLQASDLGFAI
APRLNAAGRLENMSLGVELLIAENMEIARQLAFELDSLNQTRKEFEQEMKTEALAICANL
PSLMQKEQAHGIVLYQPDWHQGVIGILASRIKDQFHRPVIAFAQEGENSEYLKGSARSIA
GLHMRDLLERIDSLYPDLIIKFGGHAMAAGLTIHQENFLRFQKVFDEIINEIIEPEQLQG
VIYTDGELAPSELNIEIAELLQQAGPWGQNFPEPTFEGEFRLLQQRILGGKHLKLMVEQP
NGGLFDAIWFNADLRYFPDLSIKQVKLVYKLDINEFRGNKNLQLRVETLII
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
ttgcaatttttacatagaccccatcaattagcgaatattgatgcggcggttgagttgttg
gtagatgcctataagcaacaattacgcattattattgttggagattttgacgcggatggt
gcaaccagtacatcattggcaattttggcattacgtcaattaggctttgaaaaggttgat
tatctgattccggatcgtttttcacaaggctacggtctaagtctggcggttgctgaaatg
gtattagccaaaggtgcagatattgtgatgacagtggataacggtatttcttcctttgaa
ggaattgattttctaaaagagcacggtatcaaagttttagttaccgatcatcatttaccg
gcagaaagcttgccgaatgcggatgcgatggtgaatccgaatttggcggattgtactttc
ccttcaaaatctttagccggagtgggggtagcgttctatgtgatgttggcacttcgaggc
agaatgcgtgaattaggatgctttaaagagcaagaacctaatttagcggaattattggat
cttgttgcattgggaacagtagcggatgtggttccgcttgatcataataaccgaatttta
gttcatcaaggattaaaccgtattcgttcggggcattgtcgagcaggtattcgtgcttta
gcggaagtgtctaagcgagatttatcttctctacaagctagcgatttaggttttgcaatt
gcccctcgtttaaatgcggcaggacgtttggaaaatatgtcgttaggcgtagaactgctc
attgcagagaatatggagattgcacgtcaattagcatttgaattggatagcctcaaccaa
acccgtaaagagtttgagcaagaaatgaagacggaagccttggcaatttgcgcaaattta
ccgagtttgatgcaaaaagaacaagcgcacggtattgtgttatatcaaccggattggcac
caaggtgtgatcgggattttagcttcacgtattaaagatcaatttcatcggccggtcatt
gcgtttgcacaagagggtgaaaacagtgaatatttgaaaggttcggcacgttcaattgcc
ggattacatatgcgtgatttattagaacgtatagattcattatatccggatttaattatt
aaattcggtgggcatgcgatggcagcaggtttaacaattcatcaagagaattttttacgt
tttcaaaaagtatttgatgaaattattaatgaaataattgaaccggaacaattacaaggt
gtcatttatacggatggggaattagcaccatctgaattaaatatcgaaatagcggaatta
ttacagcaggcggggccttggggacaaaacttcccagagcctacgtttgaaggtgaattt
cgtttattgcaacagcgtatactaggtggtaaacacttaaagttaatggtcgagcaacct
aacggtggattatttgatgcaatttggtttaatgccgatttgcgttattttcctgattta
tcgattaaacaagttaaattggtttacaaacttgatataaatgagtttagagggaataaa
aatttacaattaagagtcgagacattaattatttag
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