KEGG   Agrobacterium tumefaciens S33: AWN88_02590Help
Entry
AWN88_02590       CDS       T04213                                 

Definition
(GenBank) DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ata  Agrobacterium tumefaciens S33
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ata00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AWN88_02590
Enzymes [BR:ata01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AWN88_02590
DNA repair and recombination proteins [BR:ata03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AWN88_02590
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
circular:complement(567738..570230)
Genome map
AA seq 830 aa AA seqDB search
MGLQTYNAKRSFDKTPEPKGTKADVEGSSFVIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLDPEEKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVIVWDRGVWRPIGDARKSYRKGH
LEFELEGEKLRGRWHLVRMHGKPGEKRENWLLIKGDDDEARHDGGADILEERPESVKTGR
SVEDVASKPKDTWNSKPVSKKATASSSGRKQAHDLPRGARKQALPSFVLPALATLKPKPP
GGDRWLHEIKFDGYRLQVRLDHGKLQLLTRSGLDWTEKFGDAVARALKALPAETALIDGE
IVVERDSGASDFSALQQDLSEGRSDRFVFYAFDLLYLDGSDLRGAALTERKALLEKLLPA
GNPQLRYSEHFEESGALVLDHACRLSLEGVISKVKDSKYVSGRKGDWVKSKCSMRQEFVI
GGYTVSSTSDHAIGSLALGVYEKGKLRHVGRVGTGYTGEVAEMLLGRLKPLAQKESPFGE
KLTALARRDLHYVKPDLVAEVEFRAWSGDGNLRHASFRGLREDKPAQEIEREEKAVNDTR
PPQSAIQFTHPDRLYWPDDGVTKEGLADYYAQVWKQMAPFVVNRPLALLRCPEGIEGQRF
FQKHAWRGINKAIEQIRDPKDKAGEPLIRITDYDGMMALVQSAALEIHPWGATTASWEKP
DMITMDIDPAEDVSWEDVIEAALELKRRFEAAGLAAFVKTSGGKGLHVVAPLKPQAGWTA
VKAFAKAMAADMSKAEPDRYLSVATKAKRKGRIFIDYLRNGRGNTAVAPYSTRARPGAAV
SAPLEWSELTADIGPAHFTVNNIGARLSALKKDPWEGFFAAAEALPKKAR
NT seq 2493 nt NT seq  +upstreamnt  +downstreamnt
atgggattgcagacctataacgccaaacgcagcttcgacaagacccctgagcccaaaggg
acgaaggccgacgtcgaaggctcgagcttcgtcatccagaaacatgatgcccgcaggctg
cattacgattttcgtctggaaatggatggggtgctgaagagctgggcggtcacgcgaggc
ccaagccttgatccggaagaaaagcgccttgccgtgcacgtggaagaccatccgctcagt
tatggcgatttcgagggtgtcatcccaaagggacaatatggtggcggaaccgtcatcgtt
tgggatcgcggcgtctggcggccgatcggcgacgccagaaagagctatcgaaaaggccat
ctcgaattcgagctggaaggcgagaagctgagaggccgctggcatctggtgcgtatgcac
ggaaagcctggcgaaaagcgggaaaactggctgctgatcaagggcgatgatgacgaggcg
cggcacgacggcggtgccgatattctggaagagcggccggaatcggtgaaaaccggtcgc
agcgtcgaagatgtcgcttcaaaaccgaaggacacgtggaattccaaaccggtgtcgaaa
aaggccacggcatcctcttcaggccggaagcaggcgcatgatttgcccaggggcgcgcgt
aaacaggcgcttccgtccttcgtgctgccggcgcttgccacgctgaagccgaaaccgcct
ggcggcgatcgctggctgcacgaaatcaagttcgacggataccgactgcaggtccggctc
gaccacggcaaactccagctccttacccgtagtggtctggactggacagagaaatttggg
gatgcggtggcccgcgcgttgaaggccttgcccgccgaaacagccctgatcgacggtgaa
atcgtcgtggaacgggacagcggcgcatccgacttttcagccctgcaacaggatttaagt
gaagggcgcagcgaccgtttcgtcttctacgccttcgatctcctgtatctcgatgggtcc
gacctgcgcggcgcagcgctcaccgaacgcaaggctctcctcgaaaaactccttccggcg
ggcaatccgcagctgcgttacagcgaacatttcgaggagagcggcgcgctggtccttgac
cacgcctgtcgtctcagcctcgaaggggtgatctccaaggtcaaggacagcaaatatgtc
tccggccgcaagggtgattgggtgaaatcgaaatgttcgatgcggcaggaattcgtcatc
ggtggttatacggtttcttccacttcggatcatgccatcggttcactggccctcggcgtc
tatgaaaagggcaagctgcgccatgtaggccgcgtcggtacgggttacaccggcgaggtg
gctgagatgctgctcggacgcctgaagccgctcgcgcaaaaggaaagccccttcggagaa
aagctgaccgcgcttgcacgtcgcgacctccactacgtcaaaccggacctcgtggcggag
gtcgaattccgggcgtggtcgggcgatggcaatctgcggcacgcctcattccgaggactg
cgcgaggataagcctgctcaagaaatcgaacgcgaggagaaggccgtgaacgacaccaga
ccgccgcagtctgccatccaattcactcacccggaccgcctttactggccggatgacggc
gtgacgaaggaaggtcttgccgattattatgcccaggtctggaagcagatggcgcccttc
gtggtcaacaggccgctggcgctgctgcgctgccccgagggtatagaagggcagcggttt
ttccagaaacacgcctggcgcggcatcaacaaggccatcgaacagatcagggatcccaag
gacaaggccggcgaaccactgatccgcatcaccgattatgacggcatgatggcgctcgtg
cagtctgcggcgcttgaaatccacccatggggagcgaccaccgcgagctgggaaaagccg
gatatgatcaccatggatatcgatcccgccgaggatgtctcctgggaggatgtgatagag
gcggcgctcgaactgaagcggcgttttgaagcggcgggtctggcagctttcgtcaagaca
tcaggcggcaaggggcttcatgtggttgcccccctgaagccgcaggcgggctggacggca
gtcaaggcatttgccaaagccatggccgcagacatgtcgaaggccgagccggacaggtat
ctctcggtcgcaaccaaggcaaaacgcaaaggccgcattttcatcgactatctgcgcaac
ggtcgcggcaataccgcggtggcgccttattcgacccgggcgcggccgggtgcggcggtc
tccgcccccctcgaatggtccgaactcacggccgatatcggtcctgcccacttcacggtc
aacaatatcggggcacgtctttccgcattgaagaaagatccctgggagggcttttttgcc
gccgcggaggctttgccgaaaaaggcgcgctaa

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