KEGG   Agrobacterium tumefaciens S33: AWN88_23820Help
Entry
AWN88_23820       CDS       T04213                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ata  Agrobacterium tumefaciens S33
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:ata00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    AWN88_23820
   03410 Base excision repair
    AWN88_23820
   03420 Nucleotide excision repair
    AWN88_23820
   03430 Mismatch repair
    AWN88_23820
Enzymes [BR:ata01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AWN88_23820
    6.5.1.6  DNA ligase (ATP or NAD+)
     AWN88_23820
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AWN88_23820
DNA replication proteins [BR:ata03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AWN88_23820
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AWN88_23820
DNA repair and recombination proteins [BR:ata03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AWN88_23820
   NER (nucleotide excision repair)
    Other NER factors
     AWN88_23820
   MMR (mismatch exicision repair)
    Other MMR factors
     AWN88_23820
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
linear:2610355..2611980
Genome map
AA seq 541 aa AA seqDB search
MKSFATLLDRLVLTPSRNGKLKLLTDYFRDTPDPDRGYGLAAIAGTLDLKSVKPALLREL
VLERMDEVLFRYSYDYVGDLAETISLVWGNIGGADDSEAQDPRLGEVVTLMNSLGRTEVR
GAVRDLLDRLDTSSRFAFLKLATGSLRIGVSARLARQALADFAGKDIIEIETLWHGLAPP
YTPLFAWLEGKADRPVLATPAIFHSVMLATPVADGDLDGLDPADYAAEWKWDGIRVQLSR
AGGTRKLYSRSGDDISGAFPDVLDAIDFEGVMDGELLIGGTARSNNLTRTFSDLQQRLNR
KTVTAKMLDDYPAFIRAYDLLFDGESDIRAQTYLQRRGRLSDIIEHAPHDRFDLSPLIGF
SSWQELDTLRAAPPDPVIEGVMIKRRDSAYQAGRAKGPWFKWKRDPYNIDAVMMYAQRGH
GKRSSYYSDFTFGVWAEGEDGEQLVPVGKAYFGFTDAELEVLDKFVRDNTVERFGPVRAV
RATPDFGFVLEVAFEGINRSTRHKSGVAMRFPRIARLRADKLPAEADRLSTLVAMIDGVE
G
NT seq 1626 nt NT seq  +upstreamnt  +downstreamnt
atgaaatccttcgccacccttcttgaccgcctggttctcaccccgtcgcgcaatggcaag
ctgaagctgctgaccgattatttccgcgatacgcctgatcctgaccggggttacgggctc
gcagccattgccgggacgttggaccttaaaagtgtcaaaccggccctgctgcgcgagctg
gtgctggaacgcatggacgaggtgttgttccgctattcctatgattatgtgggcgatctc
gccgaaaccatttcgctggtctggggcaatatcggcggtgctgacgattcagaggcacag
gatccgcgtcttggtgaagtggtgacactgatgaattcgcttggccgtacggaggtgcgc
ggtgcggtgcgtgatctcctggatcggctcgatacgtcctctcgtttcgctttcctcaaa
cttgccaccggcagcctgcgcatcggtgtttcggctcggctggcgcgtcaggcgctggcg
gattttgcggggaaagacatcatcgagatcgaaaccctttggcacgggctggcgccgccc
tatacgccgcttttcgcatggctcgagggcaaggcggaccgcccggtgctggcaacgccc
gccatcttccattcggtgatgctggcgacgccggtggcggatggcgacctcgatgggctg
gaccccgccgactacgccgccgaatggaaatgggacggtattcgtgtgcaattgtcccgc
gccggtgggacacggaaactctattcccgttcaggcgacgatatttcaggcgccttccct
gacgttcttgacgcgatcgatttcgaaggtgtgatggatggtgagctgctgattggcggc
acggcacggtccaacaatctcacccgaaccttttctgacctgcagcagcgactgaaccgc
aagacggtgacggcgaagatgctggacgactatcccgccttcatccgcgcctatgacctg
ctgttcgacggcgagagcgatatccgcgcgcagacctatctgcagcgtcgcggccggctg
tctgacattatcgaacatgcaccgcatgaccgcttcgacctatcgccactgatcggcttt
tccagctggcaggagctcgatacgctacgcgccgcaccgcccgatccggtcatcgagggc
gtcatgatcaagcgccgcgacagcgcctatcaggccggccgcgccaaggggccgtggttc
aagtggaaacgcgatccctacaatatcgacgccgtcatgatgtatgcccagcgcggccac
ggcaaaagatcgagctattattccgatttcaccttcggtgtctgggcggagggggaggac
ggcgaacagctcgtgcctgtcggaaaggcttattttggtttcaccgatgcggagctggag
gtgctggacaagttcgttcgcgacaataccgtcgagcgtttcggcccggtgcgggcggtg
cgcgccacgccggatttcggtttcgtgcttgaagttgccttcgaaggcatcaaccgctct
acccgccacaaatccggcgtcgccatgcggttcccccgcattgcccggctgcgcgccgac
aagttgccggccgaagccgacaggctttcaacactggtggcgatgatcgacggtgtggaa
ggctag

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