Allorhizobium ampelinum: Avi_5992
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Entry
Avi_5992 CDS
T00851
Name
(GenBank) ECF family sigma factor
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
avi
Allorhizobium ampelinum
Brite
KEGG Orthology (KO) [BR:
avi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avi03021
]
Avi_5992
Transcription machinery [BR:
avi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Avi_5992
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
DUF134
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ACM39013
UniProt:
B9K2B5
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All DBs
Position
2:complement(999342..999908)
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AA seq
188 aa
AA seq
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MTLEKQSDDRGFKRDMLAALPNLRAFAVSLAGRHHVADDLVQDTIMKAWAKQDHFEPGTN
MKAWLFTILRNEFYSQMRKRGREVSDPDGIFTSQLAVHPQQYGSLDLQDFKKALDQLPSD
QREAIILVGASGFAYEEAAEICGCAVGTIKSRINRARNRLQEILGVSGEGDFGPDAHDAA
VTKRAFAV
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgacccttgaaaagcaatcggatgatcgcggcttcaagagagatatgctggctgccctg
cccaatctacgtgcgtttgccgtctcgcttgccggacgccatcacgtcgcggatgatctt
gtccaggatacgatcatgaaagcctgggcaaagcaggatcatttcgaaccaggcaccaat
atgaaagcctggttgttcaccattctgcgcaatgaattctattcgcaaatgcgcaagcgc
ggccgcgaggtctcggacccagacggcattttcacctcacagctggctgttcatcctcag
caatacggttcgctcgaccttcaggacttcaaaaaggcgctcgatcaactgccgagcgac
cagcgcgaagccattattctggtcggtgcctccggtttcgcctatgaggaagcggcggaa
atttgcggttgcgccgtcggcaccatcaagagccggatcaaccgggcgcgaaaccgcctg
caggagattcttggtgtgagcggagaaggtgatttcggacccgacgcccatgacgctgcg
gtaacgaaacgcgcattcgcggtataa
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