Allorhizobium ampelinum: Avi_8275
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Entry
Avi_8275 CDS
T00851
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
avi
Allorhizobium ampelinum
Pathway
avi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
avi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Avi_8275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avi03400
]
Avi_8275
Enzymes [BR:
avi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Avi_8275
DNA repair and recombination proteins [BR:
avi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Avi_8275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ACM39701
UniProt:
B9K447
LinkDB
All DBs
Position
pTiS4:205056..206207
Genome browser
AA seq
383 aa
AA seq
DB search
MFNNIRVDFDPAIVDVDAQTADGQVRQAAFKGLREDKPAKEVEAEKPAEPAEVDTPDPET
ARKPAPTPTTSSRLRKGAKVDVMGVLVSSPDKELWPDALDGEPVTKVDLAHYYEAVGPWL
IDHIKGRPCSIIRTPDGIGGEQFFQRHAMQGTSNLIEQVKVSGDKQPYLQIGRVEGLAAI
AQIGGAELHPWNCEPYQPEVPGRLVFDLDPGPDVDFATVVEGAREIRDRLEELGLVSFCK
TTGGKGLHVVTPLAVPKGKKLSWDEGKAFAHDVCLQMARDNPELYLTKMSKAQREGRIFL
DYLRNDRTSTAVAPLSPRARPGATVSMPLNWAQVKKGLDPKRFTIRTVPGLLKDNTAWQD
YCDGQRPLEQAIKRLEKLMRRAA
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
ctgttcaacaacatccgtgtcgatttcgacccggccatcgtcgatgtagacgctcaaacg
gctgatgggcaagtgcgccaggctgcgttcaaggggctgcgagaggataagcccgcaaaa
gaagtcgaggccgagaagccggcagaacctgccgaagtcgatacgcccgacccggaaact
gctcgcaagccggccccgacgccgacgacatcttcccgtcttcgcaagggtgcaaaggtc
gacgtcatgggcgtcctggtctccagcccggacaaggagttgtggcctgacgcacttgat
ggcgaacccgtaacgaaagtggacctcgctcactattatgaggcagtcgggccttggctc
atcgatcatatcaagggccggccgtgctcaatcattcgcacgcctgacggtattggcggg
gagcagttcttccaaaggcatgcgatgcaggggacatcaaacctgatcgaacaggtgaaa
gtctcaggcgacaagcagccgtacctccagatcggccgcgtcgagggtttggccgcgatc
gcacagatcggcggcgccgagctacatccgtggaactgcgaaccctatcagcctgaagtc
cccggtcgtctcgtcttcgatctggacccaggcccggatgtcgacttcgcgacagtggta
gaaggtgcacgagaaatcagggatcggcttgaagagctgggtctggtcagcttctgcaag
acgacgggcggcaaagggctccatgttgtaacgccgctcgctgttccgaagggcaagaag
ctgagctgggacgaaggcaaggctttcgcgcacgacgtgtgtctgcagatggcccgcgac
aatcccgagctttacctgaccaagatgtccaaggcgcagcgtgaaggccgtatcttcctg
gattatctgagaaacgaccgcacctcgacggcggtggctcccctgtcgccccgtgcccgg
ccgggagcaaccgtctcgatgcccttgaactgggctcaagtaaaaaaaggtctcgatccg
aagcggttcacaattcgcacggtgcctggacttctgaaggataatacggcgtggcaggac
tattgcgatggtcaaaggccgctagagcaggcgatcaagcgcttggagaaacttatgagg
cgggctgcgtga
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