Bifidobacterium adolescentis BBMN23: BBMN23_0531
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Entry
BBMN23_0531 CDS
T03774
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bado
Bifidobacterium adolescentis BBMN23
Pathway
bado03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bado00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBMN23_0531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bado03019
]
BBMN23_0531
03400 DNA repair and recombination proteins [BR:
bado03400
]
BBMN23_0531
Enzymes [BR:
bado01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBMN23_0531
Messenger RNA biogenesis [BR:
bado03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBMN23_0531
DNA repair and recombination proteins [BR:
bado03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BBMN23_0531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
Helicase_C
RecQ_Zn_bind
Helicase_Sgs1
ResIII
Motif
Other DBs
NCBI-ProteinID:
AJE05503
LinkDB
All DBs
Position
634888..636912
Genome browser
AA seq
674 aa
AA seq
DB search
MGKTSAGCFALRGQRMALLHLETMTQAVDSADSVDPRALEALNRYFGYDSFRPGQSGIVS
AILAGHDVLGVMPTGAGKSICYQIPAAILPGVAIVISPLISLMRDQVDALNDVGLPAAFI
NTTQTPDEQDLVFAQALSGQIKLLYVTPERLETERFRNFAVRVPISLVAVDEAHCVSQWG
QDFRSSYLGIGEFIAGLPTRPTVAAFTATATERVRRDIVSILGLHTPSITVTGFDRPNLY
FDVISMPRKDKASWVASYIASHPDESGIVYCATRKETEALAESLNSAVAELRAAGGADVS
DIGTIAVAYHGGMSADTREKAQRDFVTDRVPVVVATNAFGMGIDKSNVRFVIHHNMPESI
EAYYQEAGRAGRDGEPSRCTLLWNESDIVTRRRLLDSDYENERLTPEEQEAVRASKRRLL
DAMVGYCRTTDCLHAYMTRYFGETAGAAAKTDGKCVGGCANCEHTFETIDVTDIARAVSR
CVHDVNQHVGSGKIVKVLRGSKAQDLSYLNPESLPSFGMLDEVPEARIRDVLSQMATDGF
LTIAEGRLPIVGFGPRAAETVAPEFHYDIKKIKRADARARRTPDVSTPAVGSYVPDDGDE
ALFQKLRALRLDIARELGKPPYIVFSDKTLRDMVRVKPITDDQFLAVNGVGESKLKQYGE
RFMAAIREDSGDEA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagaccagcgccggctgtttcgctctccgcggtcaacgcatggcattgctacac
ttggaaaccatgacgcaagctgttgattccgccgattccgtagacccccgcgcattggag
gcgctgaaccgctatttcggctacgattcgttccgtcctggacaatccggcatcgtctcg
gccatcctcgccggacacgacgtgcttggcgtcatgcccaccggcgccggcaaatccatc
tgctatcagattcctgcagcgatcctgccgggcgtcgccatcgtcatctcgccgctgatc
tcactcatgcgcgaccaggtcgacgccctgaacgacgtgggccttccggccgcgttcatc
aacaccactcagacgccggacgaacaggatctcgtcttcgcgcaggcgctctccggccag
atcaaactgctgtacgtgacgccggaacgtttggaaaccgaacgattccgcaacttcgcc
gtccgtgtgccgatctcgctcgtcgccgtcgacgaagcgcactgcgtctcccaatggggg
caggacttccgttcctcatatcttggcatcggcgaattcatcgccggactgcccacacgt
ccaacggtcgccgcgttcaccgccaccgccaccgaacgcgtgcgccgcgacatcgtttcg
attctgggcctgcacacaccgtccatcaccgtcaccggtttcgaccggccgaacctgtat
ttcgacgtcatcagcatgccacgtaaagacaaagcatcctgggtggcgtcctacatcgcc
agccatccggacgaatccggcatcgtctactgcgccacgcgcaaggaaacggaagcgctc
gccgaatcgcttaacagcgccgtcgccgaattgcgtgccgcagggggtgcggatgtgtcg
gatatcggcaccatcgccgtcgcctaccatggcggtatgagcgccgacacacgagagaag
gcgcaacgcgatttcgtcaccgaccgtgtgcccgtggtcgtggccaccaacgcgttcggc
atgggcatcgacaaatccaacgtgcggttcgtcatccaccacaacatgcccgaatccatc
gaagcgtactaccaggaggcgggtcgcgccggacgagacggcgaaccaagccgctgcacg
ctgttgtggaacgaatcggacatcgtcacccgccgccggctgctcgattcggattacgaa
aacgaacgattgactcccgaagagcaggaggccgtacgcgcgtcgaaacgccggctgctc
gacgcgatggtcggctactgccgtaccacggactgcctgcacgcgtacatgacccggtat
ttcggcgaaaccgcgggcgcggcggcgaaaacggacggcaaatgcgtgggcggttgcgcc
aactgcgagcacacattcgaaaccatcgacgtcaccgacatcgcccgagccgtcagccgt
tgcgtgcacgatgtgaaccagcatgtcggcagcggcaaaatcgtcaaggtgctgcgcggt
tcgaaggcacaggatctaagctatctcaaccccgaaagcctgccgtcgttcggcatgctc
gacgaagtgccggaagcgcgcatccgcgacgtgctgagccagatggccaccgacggcttc
ctgacgatcgcggaaggacgcctgccgatcgtcggcttcggaccccgtgcggcggaaacg
gtcgcacccgaattccattacgacatcaagaagatcaaacgtgctgacgcccgtgcgcgt
cgaacgcccgacgtgtccactcccgctgtcggatcgtacgtgccggatgacggcgacgag
gcgctattccagaagctgcgtgcgctgcgactggacatcgcgcgcgaactcggcaaaccg
ccgtacatcgtgttctccgacaagacgttgcgtgacatggtacgggtcaagccgatcact
gacgaccagttccttgccgtcaacggtgtgggggaaagcaagctcaaacagtacggcgaa
cggttcatggccgcgattcgggaggattccggcgacgaggcttga
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