Burkholderia ambifaria AMMD: Bamb_2153
Help
Entry
Bamb_2153 CDS
T00398
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bam
Burkholderia ambifaria AMMD
Pathway
bam03410
Base excision repair
bam03430
Mismatch repair
bam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Bamb_2153
03430 Mismatch repair
Bamb_2153
03440 Homologous recombination
Bamb_2153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bam03400
]
Bamb_2153
DNA repair and recombination proteins [BR:
bam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Bamb_2153
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Bamb_2153
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bamb_2153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Glyco_transf_4
HTH_3
Motif
Other DBs
NCBI-ProteinID:
ABI87709
UniProt:
Q0BDR4
LinkDB
All DBs
Position
1:2364956..2366653
Genome browser
AA seq
565 aa
AA seq
DB search
MTRIVTRPVAPADAEALARHGLHPVLARLYASRGVQSPTDIETALARLVPPTELKGCADA
AALLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEI
VELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPNQPG
CAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVRLDG
NNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLGFGLGPRLNAAGRLSDMSL
GIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLADVDPADACTITLFNPEW
HQGVIGIVAGRLKEKFHRPSFTFAHADEAGTRVKGSGRSIPGFHLRDALDLVSKREPDLI
VAFGGHAMAAGLTLGTDDVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFTPQFVG
LLDEAVWGQGFPAPLFSGEFDVVSQSLVKEKHLKLQLARGRQRFNAIWFNHTEPLPASAL
IAYRLVADTWNGVTRVQLIVEHAAG
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgacccggatcgttacccgccccgtcgcgcccgccgacgcagaagcgctcgcgcgccac
ggcctgcaccctgtcctcgcgcggctgtatgcgtcgcgcggcgtgcagtccccgaccgac
atcgagaccgcgctcgcgcgcctcgtgccgcccaccgaactgaaaggctgcgcggacgcc
gcggcgctgctcgccgacgcgatcgccgacaagcggcgcctgctggtcgtcgccgactac
gattgcgacggcgcgaccgcctgtgcggtcgcggtgcgcggcctgcgaatgttcggcgcg
cagatcgactacctggtgccgaaccgcttcgaatacggctacgggctcacgcccgagatc
gtcgaactcgcggccgcacgcaagcccgacctgctgatcaccgtcgacaacgggatcgcg
agcgtcgcaggcgtcgaagcggcaaatgcacgcggcatcgacgtgctcgtgaccgaccac
cacctgcccggcgacgcgctgcccgccgcgcgcgcgatcgtcaacccgaaccagcccggc
tgcgcgttcccgagcaagcacatcgccggtgtcggcgtgatgttctacgtgctgctcgcg
ctgcgcgccgagctgcgccgccgcggcgcgttcgcgagcaaggaagccgagccgcgcctc
gacggcctgctcgacctcgtcgcgctcggcaccgtcgccgacgtggtgcggctcgacggc
aacaaccgcgtgctcgtcgcgcaggggctgcagcgcatccgcaacggccgcatgcagccg
ggcatcgccgcgctgttccgcgccgccggccgcgaggcgcgcaccgcctcaggcttcgac
ctcggcttcggcctcggcccgcgcctgaatgccgccgggcggctctcggacatgtcgctc
ggcatcgaatgcctgatcaccgacgacatcggccgcgcgtgggacctcgcgcagcaactc
gacgtgatgaaccgcgagcgccgcgagatcgaggccggcatgcagcaacaggcgctcgcc
gacctcgccgacgtcgatccggccgacgcgtgcacgatcacgctgttcaatcccgaatgg
caccagggcgtgatcgggatcgtcgccgggcggctcaaggagaaattccaccgcccgtcg
ttcacgttcgcgcatgcggacgaagccggcacgcgggtcaaggggtcgggccgctcgatt
cccggcttccacctgcgcgacgcgctcgacctggtgtcgaagcgcgaacccgacctgatc
gtcgcgttcggcggccacgcgatggcggccggcctcacgctcggcaccgacgacgtgccg
cgcttcgcggccgcgttcgaggcggtggcgcgcgagtggctgtccgacgacgcgctcgcg
cgcgtgatcgagaccgacggcgaactggaagacgcgtatttcacgccgcagttcgtcggg
ctgctcgacgaagccgtctggggccagggctttccggccccgcttttctccggcgagttc
gacgtcgtgtcgcagtcgctcgtgaaggaaaagcacctgaagctgcagctggcgcgcggc
cgccagcgcttcaacgcgatctggttcaaccacaccgagccgctgccggcgagcgcgctg
atcgcgtatcgcctcgtcgccgacacgtggaacggcgtgacgcgcgtccagctgatcgtc
gagcacgcggccggctga
DBGET
integrated database retrieval system
