Bacillus amyloliquefaciens LFB112: U722_17330
Help
Entry
U722_17330 CDS
T02965
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
bamf
Bacillus amyloliquefaciens LFB112
Pathway
bamf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bamf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U722_17330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bamf03400
]
U722_17330
DNA repair and recombination proteins [BR:
bamf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U722_17330
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U722_17330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
DUF87
AAA_7
AAA
AAA_22
AAA_25
AAA_30
AAA_16
CDT1
P-loop_SecA
AAA_19
AAA_5
TrwB_AAD_bind
UB2H
AAA_6
EAD4
Motif
Other DBs
NCBI-ProteinID:
AHC43797
LinkDB
All DBs
Position
complement(3397615..3399600)
Genome browser
AA seq
661 aa
AA seq
DB search
MKDRFELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLLGATGTGKTFTVSNLIKEVNKPT
LVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEID
KLRHSATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVSLRPEMEIERNELLRKLVDIQ
YARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAILNIEQELEERLKVMHENGKLLEAQRLEQRTRYDLEMMREM
GFCSGIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQV
LVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTPEMIEQIIRPTGLLDP
LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNAEGRVIMYADKITNSMEIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQ
AAEDKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAARALDFERAAELRDLLLELKAE
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatcgttttgagttagtctcgaaatatcagccccagggagatcagccgcaagcg
attgagaagcttgtcaaaggcatacaggaaggcagaaaacaccagactctcctgggtgcg
acagggacgggcaaaacctttaccgtgtccaatctgattaaagaagtgaacaaaccgaca
ctggtcattgcccataacaaaacccttgccggacagctgtacagcgagtttaaggagttt
ttcccgaacaacgctgtcgagtattttgtcagctattacgattactatcagccggaggcg
tacgtgcctcaaacggatacttttatagagaaagacgcaagcattaatgatgaaattgat
aaactgagacactccgcgacatcctctctgtttgaacggagagatgtcatcattatcgcg
agtgtgtcatgcatatacggcctcggttcgcctgaagaataccgggaaatggtcgtgtcg
ctcagaccggaaatggagattgagcggaacgagctgctgagaaagcttgtggatatccag
tatgcccgcaatgatatcgactttcagcgcgggacgttccgcgtgcgcggcgacgttgtg
gaaatctttccggcttcccgtgacgaacattgtatcagagtggaatttttcggagacgaa
attgagcggatcagggaggtcgacgctttgaccggagaaattctcggcgaccgtgaccat
gtcgcgattttcccggcttcccacttcgtcacccgggcggaaaagatggaaaaagcgatt
ctgaatattgaacaggagcttgaggagcgcttgaaagtgatgcacgaaaacggcaagctc
cttgaagcgcagcggcttgagcagcggacgaggtatgatcttgaaatgatgcgggaaatg
ggtttttgctcagggatcgagaactattcaagacatttgacgctccgtccgccgggctct
acgccgtatacgctgcttgattattttccggacgattttatgattgtcgttgatgaatca
catgtgacgattccgcaggtgcgcggcatgttcaacggtgaccaggcgagaaaacaggtg
cttgtcgatcacgggttccgcctcccgtcagcgcttgacaaccgtccgctccgattcgag
gaatttgaaaagcatatgcacaatatcgtgtacgtgtcggcgactccgggaccgtatgaa
attgagcatacgccggaaatgatcgagcagatcatcagaccgacgggactcctcgatccc
ctcattgacgtccgtccgatcgaaggacagattgatgatttgatcggcgagattcaggcg
aggattgaacggaatgaacgcgttctcgtgacgactttaacgaaaaaaatgtcagaggat
ctgaccgattatctcaaggaaatcggcatcaaggtcaattatctgcattccgagattaag
acgcttgaacggattgaaatcatccgtgacctccgcctcggaaaacatgatgtgttaatc
ggcatcaacctgctgagggaagggcttgatattccggaagtgtcacttgtcgccattctc
gatgcggataaagaaggcttcctccgttctgaacgttcgctgattcagacgatcggacgg
gcggcacgaaacgcggaaggccgcgtcatcatgtatgccgataaaatcacgaattcgatg
gagatcgcaattaatgaaacgaagcgccgacgggaacagcaggagcgctttaacgaaatt
cacggcattacgccgcaaacgatcaataaggaaatccgcgatgtgatccgcgcgacgcag
gccgctgaggataaagaagaatataaaacaaaagccgcgcctaaactggcgaagatgacg
aagaaagaacgccagaaagtcgttgagcaaatggagcacgaaatgaaagaagcggccaga
gcgcttgatttcgagcgggcggcagagcttcgtgatttactgttagagcttaaagcggaa
ggatga
DBGET
integrated database retrieval system
