Bacillus amyloliquefaciens DSM 7: BAMF_0657
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Entry
BAMF_0657 CDS
T01321
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bao
Bacillus amyloliquefaciens DSM 7
Pathway
bao03030
DNA replication
bao03410
Base excision repair
bao03420
Nucleotide excision repair
bao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BAMF_0657 (ligA)
03410 Base excision repair
BAMF_0657 (ligA)
03420 Nucleotide excision repair
BAMF_0657 (ligA)
03430 Mismatch repair
BAMF_0657 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bao03032
]
BAMF_0657 (ligA)
03400 DNA repair and recombination proteins [BR:
bao03400
]
BAMF_0657 (ligA)
Enzymes [BR:
bao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BAMF_0657 (ligA)
DNA replication proteins [BR:
bao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BAMF_0657 (ligA)
DNA repair and recombination proteins [BR:
bao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BAMF_0657 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BAMF_0657 (ligA)
MMR (mismatch excision repair)
DNA ligase
BAMF_0657 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BAMF_0657 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
5_3_exonuc
HHH_8
Motif
Other DBs
NCBI-ProteinID:
CBI41783
UniProt:
A0A9P1NGF5
LinkDB
All DBs
Position
681148..683157
Genome browser
AA seq
669 aa
AA seq
DB search
MMDKETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDS
PTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDGVAYNVELKIDGL
AVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLSIEVRGEAFMPKQSFE
ALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGL
DFLDELGFKTNQERKQCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQEELGYT
AKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASLHNEDL
IKEKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTVCPECESELVRIEGEVA
LRCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREHLVRNVADLYKLTKEQVIR
LERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEE
ELLAVDEIGEKMADAVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKT
IVLTGKLEELSRNEAKTQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWDE
AQLLGELKK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgatggacaaagaaacagcgaaacaccgggcagatgaattgcgccgcaccatcgatcag
tacagttacgaatattacaccttagatgaaccgagcgtaccggattccgagtacgacaga
ctgatgcaggagctgattgcgatagaagaagagcacccggagctcagaacgcctgactcg
cccacacagcgggtcgggggagcggtgcttgaatcatttcaaaaggtgcagcacggcacg
ccgatgctcagtctcggcaacgcatttaacgatgatgatcttcgcgattttgaccgccgc
gtccgtcaggctgtcggggacggcgtcgcttacaatgtggagctgaaaatagacggtctt
gctgtttctctccgttatgaagacggctatttcgtcagaggcgcgacaagaggagacgga
acaacgggcgaagatattacggaaaacttaaaaacgatccgcaacattccgctgaaaatg
aaacgaaacctttccatagaagtgcgcggagaggcgttcatgccgaaacagtcatttgaa
gcgctcaatgaagaacggctgaaacatgaagaggagccgttcgccaatccccggaatgct
gctgcgggctcactcagacagctcgatccgaaaattgcagcgaaacgaaatcttgacatc
ttcgtctacagtatagcggagcttgacgaaatgggtgtggaaacacagagtcagggcctg
gattttctggatgagctcggttttaaaacaaaccaggaacggaaacaatgcgccacgata
gatgaagtaattgaaatgatcgaggagctgcaggcgaagcgggccgacctcccgtatgaa
attgacggaatcgtcatcaaagtcgattcgctcgaccagcaggaagagctcgggtatacg
gcaaaaagcccgcgctgggcgattgcatataaattcccggcagaagaggtcgtgacaaaa
cttctcgatatcgaactgaatgtcggaagaacaggcgtcattacgccgaccgccgttctg
gaaccggtaaaagtcgcgggaacgacggtctcaagagcatcgcttcataacgaagattta
attaaagagaaggatatccgcattctcgataaagtggtcgttaaaaaagcgggcgacatt
atccctgaggtcgtcaatgtcttaattgaacagcggaccggagaagaaaaagaattcaat
atgccgaccgtctgccctgagtgcgaaagcgagcttgtgcgcattgaaggagaagtcgcg
ctgcgctgcatcaacccggaatgtccggcgcaaatcagagaaggcctgatccactttgtt
tcacgcaacgcgatgaatattgacggactcggagaacgtgtcatcacacagcttttccgt
gaacatctcgtccgtaatgtcgctgatttatataagctgacaaaagaacaggtcatccgg
cttgagcggatgggagaaaaatcaactgacaatctgatcagctccatccaaaaatcgaaa
gagaattcattggaacgcctgctgttcggtctcggcatccgttttatcggctcaaaagcg
gccaaaacactcgccatgcattttgaaagcctggaaaatctgaaacaagccacggaagaa
gagctgctggcagtagatgaaatcggtgaaaagatggccgatgccgtcatcacctatttc
cgaaaagaagaaatgcttgagcttttgaatgaactggaagagctcggtgtgaacacactc
tataaaggcccgaaaaaagtaaaagcggaggacagcgactcttattttgccggcaaaacc
atcgtgttaaccggaaagcttgaagagctgtccagaaatgaagccaaaacgcagattgaa
gcgctcggcggaaagctgacgggatctgtcagcaaaaaaacagacttgctgattgccgga
gaagcggccggaagcaagctgacaaaagcgcaggaattaaacattgaagtatgggatgaa
gcacagctattgggagagctaaagaaataa
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