Bdellovibrio bacteriovorus W: BDW_13705
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Entry
BDW_13705 CDS
T03036
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
bbw
Bdellovibrio bacteriovorus W
Pathway
bbw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BDW_13705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbw03400
]
BDW_13705
DNA repair and recombination proteins [BR:
bbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BDW_13705
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BDW_13705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
SMC_N
AAA_21
AAA_29
AAA_16
nSTAND1
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_33
UvrA_inter
ATPase
AAA_25
NMDAR2_C
AAA_15
Viral_helicase1
BCA_ABC_TP_C
Motif
Other DBs
NCBI-ProteinID:
AHI07241
LinkDB
All DBs
Position
2868300..2871245
Genome browser
AA seq
981 aa
AA seq
DB search
MKEIHLWGVKQNNLKNIEVKIPVGSLTVICGPSGSGKSSLAFETLFAEGQRRFIESMSNY
ARQFLNKAPKPDIEGISNIPPAISIEQKNSVKSSRSTVGTTTEVIDYLRLLYEKIGKSYC
PIHQCPTEKESVTEATQKTLNNFAGKRGYILVEITSEGRVAEGKKLHSLLLQDGYLRIYR
PAIEPSKGSEKVTKSKAKTKKKTSKKTSTPIVQEYIAQPTSSPITKQTMGTVEEISDAAA
IKKGLPKDTFYLVIDRMSFNADEEGRIADSLTQAYEASIKYNVNLTTRKATILTTEGDQL
QVSEENSCPICAYTPPPTTSRLFSFNSPIGACPTCKGFGNILDISEEKVIPNPNMSIAQG
ALSPFWMPSAAQDKKELLAFCKKQKIDIHSPWADLPQEHREVIWNGNKDFFGVVGLFNYL
DQIKYKMHVRVFIARFRSAFTCPTCKGSRLRTEANHVLVANSNISQLSEMTIEELLAFFT
KLSLPEHQVEVAGEILKQIHARLEFLVRVGVHYLNLGRETKTLSGGEFQRLILANQLGMG
LSQALYVLDEPTVGLHPRDNDRLISILKDLKELGNTLVVVEHDHDVINSSENIIEMGPGS
GYLGGEVVYSGPTKDFYNYEKSNTASYLKENMKKPLLREIKPVDITKYKVKIELKGAKGH
NLKNLDVIFPLNRLVSVTGVSGSGKSTLVSKTLYPAVARALDIDYIPAQEYAALEGIENI
KNVLLIDQSPIGKSARSSPVTYLKAFDAIRTVMSQTPEAQARGYTPGTFSLNVDGGRCPV
CKGVGHEEIDMMFMDNVIIPCDACDGKKYREEILEVLYKNKNIHDILAMTVSEAMDFFVA
HPNIRKPLSLLKEVGLDYLQLGQPANSLSGGESQRLKIAKELSQVTQKATLYILDEPTTG
LHFREIELLMRVLSKLIDAGGSVIVVEHNLDVIRGSDYVIDLGPEAGKKGGNLVASGSPE
EIMNNKKSLTGKYLKRYLGKS
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagattcacctttggggggtgaagcaaaacaatctaaagaatatcgaagtaaag
atcccagtgggatctttaacggtaatctgtggacctagcggctctggcaaatcctccctt
gcctttgagacattgtttgccgagggacagcggcgctttattgaaagcatgtcaaactat
gcgcgacagtttttaaacaaggcgccgaagcccgatattgaaggcatctcaaatattcct
ccagcaatctctatcgaacaaaagaactctgtaaagagctcccgctcaaccgtcggcaca
acgacagaggtgattgattaccttcgtcttctctacgaaaaaattggcaagtcctattgc
cccattcatcaatgccctacagagaaagaatcggttaccgaggccactcaaaagaccttg
aataactttgcgggaaaacgcggatatatattagttgaaattacctctgaaggaagagtt
gctgaaggaaaaaaacttcactctctgcttctgcaagatggttatctaagaatttatcgt
ccagccattgaaccttcaaaaggctctgaaaaagtcacaaaatctaaagcgaagacgaaa
aagaaaacttccaagaagacctccacacccatagttcaggaatacattgcccagccgaca
agttctcctatcacaaaacaaaccatgggaacggttgaagaaatcagtgatgcggctgcg
atcaaaaaaggactgccgaaagacaccttctatttagtcatcgatcgcatgagctttaac
gcagatgaagaggggcgcattgctgactctttaactcaagcttatgaagctagtattaaa
tacaacgttaatctcacgacccgaaaagcaactattctaacaactgagggtgatcaactc
caagttagtgaagaaaactcttgcccgatctgtgcctacactccaccacctacgacttcg
agactctttagtttcaattcacctattggggcgtgcccaacctgcaaaggctttggaaat
atcctcgatatatcagaggaaaaagtaattcctaatccaaacatgtcgattgctcaaggt
gccttaagccctttctggatgccgagcgcggctcaggacaaaaaagagctcttggccttc
tgtaaaaaacagaagatcgatattcactctccttgggcagaccttcctcaagaacatcga
gaagttatttggaatggaaataaggatttttttggtgttgtcggactgtttaactacctt
gatcagatcaaatacaaaatgcatgtgcgtgtctttatcgcacgattccgcagcgccttc
acttgcccaacttgcaaagggagccgcctgcgcacagaagccaatcatgttttagtagcg
aattctaatatcagtcagctctcggagatgacgattgaagaacttttagcattcttcaca
aagctctctctccctgagcatcaagtcgaagtcgccggagaaattcttaaacagattcat
gctcgcttagagttcttagtgcgcgtcggtgttcactacttgaatcttgggcgtgaaaca
aaaacactttctggtggagaatttcaacgtttaattctcgccaatcaactgggcatgggg
ctttctcaagctctttatgtattagatgagcccactgtgggtcttcacccccgagataat
gatcgacttatttcaattctcaaagaccttaaagagttaggtaacacccttgtcgttgtt
gaacacgatcacgatgttattaactccagcgagaatattatcgaaatgggccctggatct
ggatacctcggcggagaagttgtttactctggaccaactaaagatttctacaactatgaa
aagtcgaacacagcttcctatctcaaagagaatatgaagaaaccactgcttcgtgaaatt
aagccggtcgacatcaccaagtataaagtaaaaatcgaactcaagggcgctaaaggacat
aatctaaaaaatctagatgtcatcttccctttaaatcgcctcgtttctgttactggcgtg
agtggatcaggaaaatcaacacttgtttccaaaaccctttacccagctgtcgcacgagct
ctggatattgattatattcccgctcaggaatatgcagcccttgagggaattgaaaatatt
aaaaacgttcttctcattgatcaatcccctattgggaagtcagcaagaagttctccagtt
acatatttaaaagcattcgatgcgattcgcacggtgatgtcacaaactcctgaggctcaa
gccagaggatatacacctggaacgttcagtttaaacgtcgacggcggaagatgccccgtt
tgtaaaggcgttggccatgaagagatcgacatgatgtttatggataacgtcatcattcct
tgcgacgcctgcgacgggaagaaataccgcgaagaaattcttgaagttctttataagaat
aagaatattcacgatatccttgccatgacggtctctgaagctatggacttctttgtggct
caccctaatatccgcaaacctctaagtcttctgaaagaagtagggttggattacctacaa
ttaggacaacccgcaaactcactgagcggcggagagtctcagcgccttaaaatcgccaaa
gagctctctcaagttacgcaaaaagcaacgctctatattctcgatgaacctacaacagga
ctgcatttccgcgaaatcgagcttctcatgcgcgttttgagcaaactgattgatgcaggt
ggcagcgttatcgtggtggagcataatttagacgtcatcagaggatctgattatgtgatt
gacctcggccctgaagcaggtaaaaaaggcggaaaccttgtggcatcaggttcgcctgaa
gagattatgaacaataaaaaaagcctgaccggaaaatacctcaaaaggtacctcggaaaa
agttag
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