Paraburkholderia caribensis: K788_0008176
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Entry
K788_0008176 CDS
T04141
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bcai
Paraburkholderia caribensis
Pathway
bcai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K788_0008176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcai03019
]
K788_0008176
03016 Transfer RNA biogenesis [BR:
bcai03016
]
K788_0008176
Enzymes [BR:
bcai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K788_0008176
Messenger RNA biogenesis [BR:
bcai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K788_0008176
Transfer RNA biogenesis [BR:
bcai03016
]
Prokaryotic type
tRNA degradation factors
K788_0008176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
UPF0181
KhpA-B_KH
S1_2
Motif
Other DBs
NCBI-ProteinID:
ALL64638
UniProt:
A0A0P0R8D9
LinkDB
All DBs
Position
1:1956404..1958542
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AA seq
712 aa
AA seq
DB search
MSLFNKVVKEFKWGQHTVRMETGEIARQAGGAVLVDVEDTVVLATVVGAKTAKPGQDFFP
LTVDYIEKTYSAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVM
SINPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRAQIKESSLDLV
VAGTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQAAPK
NEALISRVNEIAGNELLSAYQTRDKQARSTKLKAVYAATQAKLEEEAAAAGTVAADKASV
GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV
ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVA
CLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALAQAKEGRLHI
LGKMTSAVSGVNTELSAYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG
VVTIASTSSEGMAEAKKRIENITAEVEVGQVYEGTILKLLDFGAIVNLLPGKDGLLHISE
IANERIKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKALLNEAAQTEPTPQQ
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgtttaacaaggtcgtcaaagagttcaagtggggccagcatacggtccgcatg
gaaacgggtgaaatcgcccgccaggcgggcggcgcggtgttggtcgacgtcgaagacacc
gtcgtgctggctactgtggtcggcgcgaagacggcaaagccgggccaggactttttcccg
ctgaccgtcgattacatcgaaaaaacctattcggcaggcaagattcctggcggcttcttc
cgccgcgaaggccgcccgtcggaaggcgaaacgctgatctcgcgtctgatcgaccgtccg
ctgcgtccgctgttcccggaaggcttctacaacgaagtgcaggtcgtcatccacgtgatg
tcgatcaacccggaagtccccgccgacatcccggcgctgatcggcgcatcggcggcactc
gccgtgtcgggtctgccgttcaacggtcccgtcggtgcagcgcgcgttgcgtacatcaac
aatgagtacgtgctgaacccgacccgcgcacaaatcaaggaatcgagcctggacctcgtc
gttgccggtacggagcgcgcggtgctgatggtcgaatccgaagcggatcaactgccggaa
gacgtcatgctgggcgctgtcgtgttcggtcacgagcagatgcaaacggctatcgacgcg
atccatgaactggtccgtgaaggcggcaagcccgagtgggactggcaagcggcgccgaag
aacgaagcgctgatctcgcgcgtcaacgaaatcgcgggcaacgaactgctgtcggcatat
cagacgcgcgacaagcaggctcgctcgacgaagctgaaggcagtctacgcagccacccaa
gccaagctcgaggaagaagcagcggcggcgggcacggtggcagccgacaaggcatccgtc
ggcaacgtgctgttcgacatcgaagccaagatcgtccgttcgcagatcctgaacggcgag
ccgcgcatcgacggccgcgacacgcgcacggttcgtccgatcgaaatccgcacgggcgtc
ctgccgcgcacccacggttcggcgctgttcacgcgtggcgaaacgcaggcgctggtcgtc
gcgacgctcggcacgaagggcgatgagcagatcatcgacgcgctcgaaggcgagtaccgc
gagcgcttcatgctccactacaacatgcctccgttcgcaacgggcgaaacgggccgcgtc
ggctcgccgaagcgccgtgaaatcggccacggccgtctcgcgaagcgcgcgctggtcgcg
tgcctgccgagcgccgaagagttcggctactcgatccgtgtcgtgtcggaaatcacggaa
tcgaacggttcgtcgtcgatggcttcggtgtgcggcggctgcctcgcactgatggacgcc
ggcgtgccgatgaaggcgcacgtcgccggcatcgcaatgggcctgatcctcgaaggcaac
aagttcgcggtgctgaccgacatcctcggcgacgaagatcacctcggcgacatggacttc
aaggtggcgggcacggaagctggcgtgacggcactgcagatggacatcaagatccagggc
atcacgaaggaaatcatgcaggtcgccctcgcgcaggcgaaggaaggccgcttgcacatc
ctcggcaagatgacctcggccgtgtcgggcgtgaacacggaactgtcggcgtacgcaccg
cgcatgatcaccatcaagatcaatccggaaaagatccgcgacgtgatcggcaagggtggt
tcggtgattcgcgcgctgacggaagaaacgggcacgacgatcgacatctccgatgacggc
gtggtcacgatcgcgagcacgagcagcgaaggcatggccgaagcgaagaagcgcatcgag
aacatcacggcggaagtcgaagtcggccaggtctacgaaggcacgattctcaagctgctg
gacttcggcgcgatcgtcaacctgctgccgggcaaggatggtctgctgcacatctccgaa
atcgccaacgagcgtatcaaggacatcaacgactacctgaaggaaggccagcaagtgaag
gtcaaggtcatccagacggacgagaagggtcgtgtgcgtctgtcggcgaaggcgctcctg
aacgaagcagcacaaacggaaccgacgccgcagcaataa
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