Alkalihalobacillus clausii: ABC2213
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Entry
ABC2213 CDS
T00228
Name
(GenBank) beta-lactamase superfamily Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bcl
Alkalihalobacillus clausii
Pathway
bcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABC2213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcl03019
]
ABC2213
Messenger RNA biogenesis [BR:
bcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABC2213
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
BAD64748
UniProt:
Q5WFV7
LinkDB
All DBs
Position
complement(2339245..2340912)
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AA seq
555 aa
AA seq
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MSKQETEKVRVFALGGVGEIGKNMYGIEVDEDIIVIDAGLMFPDDDMLGVDIVIPDVSYL
VENEERVRGIILTHGHEDHIGGLSYVLKKINVPVYATKLTLGLVEEKLKEAGIHRHAELR
LIDSNSRIKLGNTPVSFFRVSHSIPDCVGVCVETSQGAIVHTGDFKFDQTPVDGKHADIG
KMAAIGQKGVLCLMSDSTNAERPGTTKSEAEAGKGIKDVFARTKGRLIVTSFASNVHRIQ
QVIQAASATNRKLAVVGKSMVRVISIAGKLGYLKIPKDLLIDMDEVNKHKPEKVAILTTG
SQGEPMSALTRMAKGAHRHITITPNDTVIIAATAIPGNETSVSAVIDQLYRIGAEVIYGS
QAVHASGHGSQEELKLMLNLMRPKFFLPIHGEIRMQHAHQQLALQVGIKKERIYIVEKGE
VIEFTKQQARRGPKVPSGHVLIDGLGVGDVGNIVLRDRRLLSKDGILVVVVTLNKKTNTI
VSGPNIISRGFVYVRESEELLEKSNELVTSILQKCVTENVNEWSSLKSNIREGLSRYLFE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgtctaagcaagaaacagaaaaagtgcgtgtgtttgccctcggcggagtcggcgaaatc
ggcaaaaatatgtacggcattgaagtagatgaggatatcattgtcattgacgcgggttta
atgttccctgatgacgatatgcttggagtcgacatcgttattccagatgtgtcttattta
gtggaaaacgaagaacgtgtacggggaattattttgacacatggacacgaagaccatata
ggcgggttgtcatatgtgctgaagaaaatcaacgtgcctgtgtatgccacaaagctaacg
ttagggctcgttgaagagaaattgaaagaagcaggcattcataggcacgcagaactgcgc
ttaatcgattccaactcgcgcattaagttaggaaatacaccagtatctttctttcgtgtt
agccatagcattccagattgtgttggtgtctgcgtggaaacgtcccaaggcgccattgtc
catacaggtgattttaagtttgaccaaacaccggtcgatggaaaacatgctgatatcgga
aaaatggcagcaattggccaaaaaggtgtgctctgcctcatgtctgattctacgaatgca
gagcggccagggacaacgaaatcggaagcagaggccggcaaaggcataaaagacgtgttc
gctcgtacaaaaggacgccttattgtcacctcgtttgcttcaaacgtccatcgaatccag
caagtgatccaagcggcttccgctaccaatcgaaagcttgcagttgttggcaaaagcatg
gtgcgcgttatttccatcgctggaaagcttggctacttgaaaataccgaaagatttatta
attgatatggatgaagtgaacaagcataaaccagaaaaagtggcgattttgacaacagga
agccaaggggagccgatgtcagcgttaacgcggatggcaaaaggagcacatcgccatatt
acgattacaccaaatgacacagtgattatcgctgctacagcgattcctggaaatgagaca
agcgtatccgccgtcatcgaccagctttaccggattggcgctgaggtgatttatggcagc
caggctgtccatgcctctggccatggttcacaagaagagctaaagttgatgcttaatttg
atgcgtccaaagtttttcttgccgatacacggggaaatccgcatgcagcatgctcaccag
caattggctttgcaagttggcataaaaaaagaacggatttatatagtcgaaaaaggggaa
gtcattgaattcacaaaacaacaagcacggcgcgggccaaaagtgccatcaggccatgtg
ttaattgacggacttggtgtcggcgatgtcggcaacattgtcttgcgcgatcgccgcttg
ctttctaaagatggcattctagtcgtggttgtcacattgaacaaaaagacaaacacaatt
gtatctggaccgaatattatttcccgcggattcgtctatgtccgtgaatcagaagagctt
ctcgaaaaatcaaatgagcttgtgacctccattttgcaaaaatgcgtgacagaaaatgtt
aatgaatggtcaagcttaaaaagcaacattcgtgaaggcttaagccgctacttatttgaa
aaaacaaaaaggcggccaatgatcttgccgatcattatggaagtgtag
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